RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 EYA4O95677 639 aa5.27□□□□□ -1.57
VPS50-219ENST00000495039 SFPQP23246 707 aaKnown RBP eCLIP5.27□□□□□ -1.57
VPS50-219ENST00000495039 CD6P30203 668 aa5.27□□□□□ -1.57
VPS50-219ENST00000495039 CLUL1Q15846 466 aa5.27□□□□□ -1.57
VPS50-219ENST00000495039 ZNF618Q5T7W0 954 aa5.27□□□□□ -1.57
VPS50-219ENST00000495039 GALNT16Q8N428 558 aa5.27□□□□□ -1.57
VPS50-219ENST00000495039 SPATA3Q8NHX4 192 aa5.27□□□□□ -1.57
VPS50-219ENST00000495039 TMEM79Q9BSE2 394 aa5.27□□□□□ -1.57
VPS50-219ENST00000495039 SLKQ9H2G2 1235 aaPredicted RBP5.27□□□□□ -1.57
VPS50-219ENST00000495039 SMOC2Q9H3U7 446 aa5.27□□□□□ -1.57
VPS50-219ENST00000495039 RLIMQ9NVW2 624 aa5.27□□□□□ -1.57
VPS50-219ENST00000495039 SMIM35A0A1B0GVV1 85 aa5.26□□□□□ -1.57
VPS50-219ENST00000495039 H0YIZ8 118 aa5.26□□□□□ -1.57
VPS50-219ENST00000495039 K7ESF4 209 aa5.26□□□□□ -1.57
VPS50-219ENST00000495039 QSOX1O00391 747 aa5.26□□□□□ -1.57
VPS50-219ENST00000495039 CHEK2O96017 543 aa5.26□□□□□ -1.57
VPS50-219ENST00000495039 KLF1Q13351 362 aaPredicted RBP5.26□□□□□ -1.57
VPS50-219ENST00000495039 CCDC93Q567U6 631 aa5.26□□□□□ -1.57
VPS50-219ENST00000495039 PPP4R3AQ6IN85 833 aa5.26□□□□□ -1.57
VPS50-219ENST00000495039 TAF2Q6P1X5 1199 aa5.26□□□□□ -1.57
VPS50-219ENST00000495039 CATSPERGQ6ZRH7 1159 aa5.26□□□□□ -1.57
VPS50-219ENST00000495039 LHFPL2Q6ZUX7 228 aa5.26□□□□□ -1.57
VPS50-219ENST00000495039 WDR53Q7Z5U6 358 aaPredicted RBP5.26□□□□□ -1.57
VPS50-219ENST00000495039 SAMD14Q8IZD0 417 aaPredicted RBP5.26□□□□□ -1.57
VPS50-219ENST00000495039 FAM109AQ8N4B1 249 aa5.26□□□□□ -1.57
VPS50-219ENST00000495039 WDR66Q8TBY9 1149 aa5.26□□□□□ -1.57
VPS50-219ENST00000495039 COG1Q8WTW3 980 aa5.26□□□□□ -1.57
VPS50-219ENST00000495039 CLPTM1LQ96KA5 538 aa5.26□□□□□ -1.57
VPS50-219ENST00000495039 CNPPD1Q9BV87 410 aa5.26□□□□□ -1.57
VPS50-219ENST00000495039 BRD9Q9H8M2 597 aa5.26□□□□□ -1.57
VPS50-219ENST00000495039 MAN1C1Q9NR34 630 aa5.26□□□□□ -1.57
VPS50-219ENST00000495039 USP35Q9P2H5 1018 aa5.26□□□□□ -1.57
VPS50-219ENST00000495039 NDUFS2O75306 463 aa5.25□□□□□ -1.57
VPS50-219ENST00000495039 GNAI3P08754 354 aa5.25□□□□□ -1.57
VPS50-219ENST00000495039 EEFSECP57772 596 aaKnown RBP5.25□□□□□ -1.57
VPS50-219ENST00000495039 GNAI1P63096 354 aa5.25□□□□□ -1.57
VPS50-219ENST00000495039 RABEP1Q15276 862 aa5.25□□□□□ -1.57
VPS50-219ENST00000495039 CNGA4Q8IV77 575 aa5.25□□□□□ -1.57
VPS50-219ENST00000495039 GNL3LQ9NVN8 582 aaKnown RBP5.25□□□□□ -1.57
VPS50-219ENST00000495039 SIDT1Q9NXL6 827 aaKnown RBP5.25□□□□□ -1.57
VPS50-219ENST00000495039 TUBD1Q9UJT1 453 aa5.25□□□□□ -1.57
VPS50-219ENST00000495039 CYP2D7A0A087X1C5 515 aa5.24□□□□□ -1.57
VPS50-219ENST00000495039 MYMKA6NI61 221 aa5.24□□□□□ -1.57
VPS50-219ENST00000495039 ZNF785A8K8V0 405 aa5.24□□□□□ -1.57
VPS50-219ENST00000495039 ADAMTS3O15072 1205 aa5.24□□□□□ -1.57
VPS50-219ENST00000495039 RPLP2P05387 115 aaKnown RBP5.24□□□□□ -1.57
VPS50-219ENST00000495039 CYP2C19P33261 490 aa5.24□□□□□ -1.57
VPS50-219ENST00000495039 ARHGAP25P42331 645 aa5.24□□□□□ -1.57
VPS50-219ENST00000495039 PSMC1P62191 440 aaKnown RBP5.24□□□□□ -1.57
VPS50-219ENST00000495039 IL10RAQ13651 578 aa5.24□□□□□ -1.57
VPS50-219ENST00000495039 TRIP6Q15654 476 aaKnown RBP5.24□□□□□ -1.57
VPS50-219ENST00000495039 ZDHHC17Q8IUH5 632 aa5.24□□□□□ -1.57
VPS50-219ENST00000495039 SIK2Q9H0K1 926 aa5.24□□□□□ -1.57
VPS50-219ENST00000495039 CFAP97Q9P2B7 532 aa5.24□□□□□ -1.57
VPS50-219ENST00000495039 HTRA2O43464 458 aaPredicted RBP5.23□□□□□ -1.57
VPS50-219ENST00000495039 GJB1P08034 283 aa5.23□□□□□ -1.57
VPS50-219ENST00000495039 CYP2C18P33260 490 aa5.23□□□□□ -1.57
VPS50-219ENST00000495039 ZNF135P52742 658 aaPredicted RBP5.23□□□□□ -1.57
VPS50-219ENST00000495039 HABP2Q14520 560 aaPredicted RBP5.23□□□□□ -1.57
VPS50-219ENST00000495039 PCID2Q5JVF3 399 aa5.23□□□□□ -1.57
VPS50-219ENST00000495039 VPS53Q5VIR6 699 aa5.23□□□□□ -1.57
VPS50-219ENST00000495039 RNF219Q5W0B1 726 aaPredicted RBP5.23□□□□□ -1.57
VPS50-219ENST00000495039 PNLDC1Q8NA58 520 aaKnown RBP5.23□□□□□ -1.57
VPS50-219ENST00000495039 EBF3Q9H4W6 596 aa5.23□□□□□ -1.57
VPS50-219ENST00000495039 SERHLQ9NQF3 203 aa5.23□□□□□ -1.57
VPS50-219ENST00000495039 DLL3Q9NYJ7 618 aa5.23□□□□□ -1.57
VPS50-219ENST00000495039 IPPQ9Y573 584 aa5.23□□□□□ -1.57
VPS50-219ENST00000495039 RAD54BQ9Y620 910 aa5.23□□□□□ -1.57
VPS50-219ENST00000495039 F2RL2O00254 374 aa5.22□□□□□ -1.57
VPS50-219ENST00000495039 PPM1DO15297 605 aa5.22□□□□□ -1.57
VPS50-219ENST00000495039 PDHA1P08559 390 aa5.22□□□□□ -1.57
VPS50-219ENST00000495039 CHRM3P20309 590 aa5.22□□□□□ -1.57
VPS50-219ENST00000495039 DAZAP2Q15038 168 aaPredicted RBP5.22□□□□□ -1.57
VPS50-219ENST00000495039 C3orf36Q3SXR2 165 aa5.22□□□□□ -1.57
VPS50-219ENST00000495039 DTX2Q86UW9 622 aa5.22□□□□□ -1.57
VPS50-219ENST00000495039 CHSY1Q86X52 802 aa5.22□□□□□ -1.57
VPS50-219ENST00000495039 C8orf58Q8NAV2 365 aa5.22□□□□□ -1.57
VPS50-219ENST00000495039 PRSS3P2Q8NHM4 247 aa5.22□□□□□ -1.57
VPS50-219ENST00000495039 C5orf34Q96MH7 638 aa5.22□□□□□ -1.57
VPS50-219ENST00000495039 ASB2Q96Q27 587 aa5.22□□□□□ -1.57
VPS50-219ENST00000495039 CAMKK2Q96RR4 588 aa5.22□□□□□ -1.57
VPS50-219ENST00000495039 DMRTA2Q96SC8 542 aa5.22□□□□□ -1.57
VPS50-219ENST00000495039 NELL2Q99435 816 aa5.22□□□□□ -1.57
VPS50-219ENST00000495039 GPR35Q9HC97 309 aa5.22□□□□□ -1.57
VPS50-219ENST00000495039 LIMCH1Q9UPQ0 1083 aa5.22□□□□□ -1.57
VPS50-219ENST00000495039 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.21□□□□□ -1.58
VPS50-219ENST00000495039 SOCS2O14508 198 aa5.21□□□□□ -1.58
VPS50-219ENST00000495039 SLC16A3O15427 465 aaKnown RBP5.21□□□□□ -1.58
VPS50-219ENST00000495039 TLR5O60602 858 aa5.21□□□□□ -1.58
VPS50-219ENST00000495039 VPS4BO75351 444 aa5.21□□□□□ -1.58
VPS50-219ENST00000495039 MALP21145 153 aa5.21□□□□□ -1.58
VPS50-219ENST00000495039 HOXA4Q00056 320 aaPredicted RBP5.21□□□□□ -1.58
VPS50-219ENST00000495039 GTF2H3Q13889 308 aa5.21□□□□□ -1.58
VPS50-219ENST00000495039 MIS18BP1Q6P0N0 1132 aa5.21□□□□□ -1.58
VPS50-219ENST00000495039 SLC4A10Q6U841 1118 aa5.21□□□□□ -1.58
VPS50-219ENST00000495039 JADE3Q92613 823 aa5.21□□□□□ -1.58
VPS50-219ENST00000495039 PDGFCQ9NRA1 345 aa5.21□□□□□ -1.58
VPS50-219ENST00000495039 DUSP22Q9NRW4 184 aa5.21□□□□□ -1.58
VPS50-219ENST00000495039 MRPS18AQ9NVS2 196 aaKnown RBP5.21□□□□□ -1.58
VPS50-219ENST00000495039 SH2B3Q9UQQ2 575 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms