RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 AGXT2Q9BYV1 514 aa20■□□□□ 0.79
COL27A1-207ENST00000494090 PABPC3Q9H361 631 aaKnown RBP20■□□□□ 0.79
COL27A1-207ENST00000494090 PCMTD2Q9NV79 361 aa20■□□□□ 0.79
COL27A1-207ENST00000494090 TBX20Q9UMR3 447 aa20■□□□□ 0.79
COL27A1-207ENST00000494090 MMP14P50281 582 aa20■□□□□ 0.79
COL27A1-207ENST00000494090 PTPRN2Q92932 1015 aa20■□□□□ 0.79
COL27A1-207ENST00000494090 NR1H4Q96RI1 486 aaPredicted RBP20■□□□□ 0.79
COL27A1-207ENST00000494090 KCNK16Q96T55 309 aa20■□□□□ 0.79
COL27A1-207ENST00000494090 RUSC1Q9BVN2 902 aa20■□□□□ 0.79
COL27A1-207ENST00000494090 UNC45AQ9H3U1 944 aa20■□□□□ 0.79
COL27A1-207ENST00000494090 PIK3C2BO00750 1634 aa20■□□□□ 0.79
COL27A1-207ENST00000494090 PRRG1O14668 218 aa20■□□□□ 0.79
COL27A1-207ENST00000494090 KDM1AO60341 852 aa20■□□□□ 0.79
COL27A1-207ENST00000494090 GPD1P21695 349 aa20■□□□□ 0.79
COL27A1-207ENST00000494090 GTF2H1P32780 548 aa20■□□□□ 0.79
COL27A1-207ENST00000494090 SREBF2Q12772 1141 aa20■□□□□ 0.79
COL27A1-207ENST00000494090 LVRNQ6Q4G3 990 aa20■□□□□ 0.79
COL27A1-207ENST00000494090 SAMD3Q8N6K7 520 aa20■□□□□ 0.79
COL27A1-207ENST00000494090 AGAP3Q96P47 875 aa20■□□□□ 0.79
COL27A1-207ENST00000494090 DIP2CQ9Y2E4 1556 aa20■□□□□ 0.79
COL27A1-207ENST00000494090 EFL1Q7Z2Z2 1120 aaKnown RBP20■□□□□ 0.79
COL27A1-207ENST00000494090 FAM118BQ9BPY3 351 aa20■□□□□ 0.79
COL27A1-207ENST00000494090 WDR3Q9UNX4 943 aaKnown RBP eCLIP20■□□□□ 0.79
COL27A1-207ENST00000494090 CTSHP09668 335 aa19.99■□□□□ 0.79
COL27A1-207ENST00000494090 CDH2P19022 906 aaPredicted RBP19.99■□□□□ 0.79
COL27A1-207ENST00000494090 SPRP35270 261 aaPredicted RBP19.99■□□□□ 0.79
COL27A1-207ENST00000494090 FBXL16Q8N461 479 aa19.99■□□□□ 0.79
COL27A1-207ENST00000494090 NUDT12Q9BQG2 462 aa19.99■□□□□ 0.79
COL27A1-207ENST00000494090 SH3BP1Q9Y3L3 701 aa19.99■□□□□ 0.79
COL27A1-207ENST00000494090 PSTPIP1O43586 416 aa19.99■□□□□ 0.79
COL27A1-207ENST00000494090 SEC23AQ15436 765 aa19.99■□□□□ 0.79
COL27A1-207ENST00000494090 SLC24A3Q9HC58 644 aa19.99■□□□□ 0.79
COL27A1-207ENST00000494090 RBP3P10745 1247 aa19.99■□□□□ 0.79
COL27A1-207ENST00000494090 AKT1P31749 480 aa19.99■□□□□ 0.79
COL27A1-207ENST00000494090 GEMIN4P57678 1058 aaKnown RBP19.99■□□□□ 0.79
COL27A1-207ENST00000494090 MDH1BQ5I0G3 518 aa19.99■□□□□ 0.79
COL27A1-207ENST00000494090 OCM2P0CE71 109 aa19.99■□□□□ 0.79
COL27A1-207ENST00000494090 OCMP0CE72 109 aaPredicted RBP19.99■□□□□ 0.79
COL27A1-207ENST00000494090 HERVK_113P62684 666 aa19.99■□□□□ 0.79
COL27A1-207ENST00000494090 SPATA17Q96L03 361 aa19.99■□□□□ 0.79
COL27A1-207ENST00000494090 PI4K2AQ9BTU6 479 aa19.99■□□□□ 0.79
COL27A1-207ENST00000494090 MANSC1Q9H8J5 431 aa19.99■□□□□ 0.79
COL27A1-207ENST00000494090 SELENONQ9NZV5 590 aa19.99■□□□□ 0.79
COL27A1-207ENST00000494090 EIF4E1BA6NMX2 242 aaKnown RBP19.98■□□□□ 0.79
COL27A1-207ENST00000494090 RPLP2P05387 115 aaKnown RBP19.98■□□□□ 0.79
COL27A1-207ENST00000494090 VCPP55072 806 aaKnown RBP19.98■□□□□ 0.79
COL27A1-207ENST00000494090 NBPF20Q3BBV1 942 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 DTX3LQ8TDB6 740 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 SEMA6BQ9H3T3 888 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 L1RE1Q9UN81 338 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 GTPBP10A4D1E9 387 aaKnown RBP19.98■□□□□ 0.79
COL27A1-207ENST00000494090 IL31Q6EBC2 164 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 SLITRK1Q96PX8 696 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 MYOZ2Q9NPC6 264 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 GRID1Q9ULK0 1009 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 CAPN6Q9Y6Q1 641 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 CEP170BQ9Y4F5 1589 aaPredicted RBP19.98■□□□□ 0.79
COL27A1-207ENST00000494090 CCL15-CCL14A0A0B4J2E2 113 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 MED24O75448 989 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 USP10Q14694 798 aaKnown RBP19.98■□□□□ 0.79
COL27A1-207ENST00000494090 NTRK3Q16288 839 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 CCL15Q16663 113 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 C16orf89Q6UX73 402 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 TAGAPQ8N103 731 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 TEX9Q8N6V9 391 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 CCDC90BQ9GZT6 254 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 MUC3BQ9H195 1237 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.98■□□□□ 0.792e-8■■■□□ 19.2
COL27A1-207ENST00000494090 DUSP10Q9Y6W6 482 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 ADAMTS13Q76LX8 1427 aa19.98■□□□□ 0.79
COL27A1-207ENST00000494090 C5orf58C9J3I9 102 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 CNGA3Q16281 694 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 CENPPQ6IPU0 288 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 EFCAB12Q6NXP0 572 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 POTEAQ6S8J7 498 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 CD302Q8IX05 232 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 ARMC2Q8NEN0 867 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 ACTRT1Q8TDG2 376 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 AGBL1Q96MI9 1066 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 MRPL1Q9BYD6 325 aaKnown RBP19.97■□□□□ 0.79
COL27A1-207ENST00000494090 NIPSNAP3AQ9UFN0 247 aaPredicted RBP19.97■□□□□ 0.79
COL27A1-207ENST00000494090 VPS9D1Q9Y2B5 631 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 SLC2A3P11169 496 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 CYP2B6P20813 491 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 PABPC5Q96DU9 382 aaKnown RBP19.97■□□□□ 0.79
COL27A1-207ENST00000494090 CMTM5Q96DZ9 223 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 FRMD8P1Q9BZ68 369 aaPredicted RBP19.97■□□□□ 0.79
COL27A1-207ENST00000494090 MARCOQ9UEW3 520 aaPredicted RBP19.97■□□□□ 0.79
COL27A1-207ENST00000494090 FOXN3O00409 490 aaPredicted RBP19.97■□□□□ 0.79
COL27A1-207ENST00000494090 AP5Z1O43299 807 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 KIF1CO43896 1103 aaKnown RBP19.97■□□□□ 0.79
COL27A1-207ENST00000494090 POLBP06746 335 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 EPC2Q52LR7 807 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 SLC40A1Q9NP59 571 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 SPDYE5A6NIY4 337 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 MYL2P10916 166 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 MKRN4PQ13434 485 aaPredicted RBP19.97■□□□□ 0.79
COL27A1-207ENST00000494090 SPDYE7PQ495Y7 208 aa19.97■□□□□ 0.79
COL27A1-207ENST00000494090 ACBD5Q5T8D3 534 aaPredicted RBP19.97■□□□□ 0.79
COL27A1-207ENST00000494090 UBQLN1Q9UMX0 589 aaKnown RBP19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms