RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 COLGALT1Q8NBJ5 622 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 LNX1Q8TBB1 728 aaPredicted RBP12.14□□□□□ -0.47
MCF2L-231ENST00000494043 ZNF606Q8WXB4 792 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 TFAP2BQ92481 460 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 RNPC3Q96LT9 517 aaKnown RBP12.14□□□□□ -0.47
MCF2L-231ENST00000494043 EIF3CQ99613 913 aaKnown RBP12.14□□□□□ -0.47
MCF2L-231ENST00000494043 RAD9AQ99638 391 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 ZSWIM1Q9BR11 485 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.14□□□□□ -0.47
MCF2L-231ENST00000494043 DNAI2Q9GZS0 605 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 DPEP3Q9H4B8 488 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.14□□□□□ -0.47
MCF2L-231ENST00000494043 ADAMTS1Q9UHI8 967 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 KIAA1257Q9ULG3 409 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 A0A087X0T9 212 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 MED7O43513 233 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 HCRTO43612 131 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 TLL1O43897 1013 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 IPO7O95373 1038 aaKnown RBP12.13□□□□□ -0.47
MCF2L-231ENST00000494043 EFEMP2O95967 443 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 PDGFRBP09619 1106 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 LINC00271P0C7V0 271 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 FAM228BP0C875 321 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 VDRP11473 427 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 TNFAIP3P21580 790 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 FGFR3P22607 806 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 LMO2P25791 158 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 PCSK1P29120 753 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 TKTP29401 623 aaKnown RBP12.13□□□□□ -0.47
MCF2L-231ENST00000494043 GFPT1Q06210 699 aaPredicted RBP12.13□□□□□ -0.47
MCF2L-231ENST00000494043 SHHQ15465 462 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 SGO2Q562F6 1265 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 OVOS1Q6IE37 1185 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.13□□□□□ -0.47
MCF2L-231ENST00000494043 CRYBG2Q8N1P7 616 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 SLC39A11Q8N1S5 342 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 FIBCD1Q8N539 461 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 ACRBPQ8NEB7 543 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 SLC30A5Q8TAD4 765 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 IGSF21Q96ID5 467 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 TNIP3Q96KP6 325 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 HEXIM2Q96MH2 286 aaKnown RBP12.13□□□□□ -0.47
MCF2L-231ENST00000494043 RTP3Q9BQQ7 232 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 DESI2Q9BSY9 194 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 GPR62Q9BZJ7 368 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 AAASQ9NRG9 546 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 SEPT11Q9NVA2 429 aaKnown RBP12.13□□□□□ -0.47
MCF2L-231ENST00000494043 DDX43Q9NXZ2 648 aaKnown RBP12.13□□□□□ -0.47
MCF2L-231ENST00000494043 NENFQ9UMX5 172 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 REXO2Q9Y3B8 237 aaKnown RBP12.13□□□□□ -0.47
MCF2L-231ENST00000494043 ADGRG1Q9Y653 693 aa12.13□□□□□ -0.47
MCF2L-231ENST00000494043 O00370 1275 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 ZNF263O14978 683 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 OAZ2O95190 189 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 ACAT1P24752 427 aaKnown RBP12.12□□□□□ -0.47
MCF2L-231ENST00000494043 PPM1AP35813 382 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 PSMC1P62191 440 aaKnown RBP12.12□□□□□ -0.47
MCF2L-231ENST00000494043 YWHAHQ04917 246 aaPredicted RBP12.12□□□□□ -0.47
MCF2L-231ENST00000494043 STILQ15468 1287 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 SPA17Q15506 151 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 FAM171A1Q5VUB5 890 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 KIAA0319Q5VV43 1072 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 TRIM72Q6ZMU5 477 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 ZSCAN30Q86W11 494 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 PALB2Q86YC2 1186 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 RNF168Q8IYW5 571 aaPredicted RBP12.12□□□□□ -0.47
MCF2L-231ENST00000494043 B3GALNT2Q8NCR0 500 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 CLP1Q92989 425 aaKnown RBP12.12□□□□□ -0.47
MCF2L-231ENST00000494043 PCDHB18PQ96TA0 734 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 GDF15Q99988 308 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 SYT15Q9BQS2 421 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 VN1R3Q9BXE9 311 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 PDCL3Q9H2J4 239 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 SPG21Q9NZD8 308 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 NAGPAQ9UK23 515 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 CDH9Q9ULB4 789 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 PCDHGC3Q9UN70 934 aa12.12□□□□□ -0.47
MCF2L-231ENST00000494043 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.12□□□□□ -0.47
MCF2L-231ENST00000494043 LAMA2P24043 3122 aaKnown RBP12.12□□□□□ -0.47
MCF2L-231ENST00000494043 KIAA1671Q9BY89 1806 aa12.11□□□□□ -0.47
MCF2L-231ENST00000494043 CEP290O15078 2479 aa12.11□□□□□ -0.47
MCF2L-231ENST00000494043 LCHNA4D1U4 455 aa12.11□□□□□ -0.47
MCF2L-231ENST00000494043 H0YGN5 161 aa12.11□□□□□ -0.47
MCF2L-231ENST00000494043 LSM8O95777 96 aaKnown RBP12.11□□□□□ -0.47
MCF2L-231ENST00000494043 CYP1A1P04798 512 aaPredicted RBP12.11□□□□□ -0.47
MCF2L-231ENST00000494043 CFHP08603 1231 aa12.11□□□□□ -0.47
MCF2L-231ENST00000494043 CCDC175P0C221 793 aa12.11□□□□□ -0.47
MCF2L-231ENST00000494043 PTPN1P18031 435 aaKnown RBP12.11□□□□□ -0.47
MCF2L-231ENST00000494043 KRT83P78385 493 aa12.11□□□□□ -0.47
MCF2L-231ENST00000494043 CYP27A1Q02318 531 aa12.11□□□□□ -0.47
MCF2L-231ENST00000494043 MRPL58Q14197 206 aaKnown RBP12.11□□□□□ -0.47
MCF2L-231ENST00000494043 CNGA2Q16280 664 aa12.11□□□□□ -0.47
MCF2L-231ENST00000494043 CLEC16AQ2KHT3 1053 aa12.11□□□□□ -0.47
MCF2L-231ENST00000494043 INTS6LQ5JSJ4 861 aaKnown RBP12.11□□□□□ -0.47
MCF2L-231ENST00000494043 VARS2Q5ST30 1063 aaKnown RBP12.11□□□□□ -0.47
MCF2L-231ENST00000494043 CCDC122Q5T0U0 273 aa12.11□□□□□ -0.47
MCF2L-231ENST00000494043 ARHGAP17Q68EM7 881 aa12.11□□□□□ -0.47
MCF2L-231ENST00000494043 ALKBH5Q6P6C2 394 aaKnown RBP12.11□□□□□ -0.47
MCF2L-231ENST00000494043 LCLAT1Q6UWP7 414 aa12.11□□□□□ -0.47
MCF2L-231ENST00000494043 THEM5Q8N1Q8 247 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms