RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 PRDM8Q9NQV8 689 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 RLIMQ9NVW2 624 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 LPAR3Q9UBY5 353 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 AGAP1Q9UPQ3 857 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 LOC102723971A0A1B0GUV8 181 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 A0A1W2PPH5 198 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 KCNQ3O43525 872 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 COQ9O75208 318 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 TIPRLO75663 272 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 INMTO95050 263 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 CHGBP05060 677 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 ZSCAN22P10073 491 aaPredicted RBP5.32□□□□□ -1.56
VPS13A-212ENST00000493341 ETV4P43268 484 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 CPT1AP50416 773 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 CCR5P51681 352 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 PTH1RQ03431 593 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 FSTL1Q12841 308 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 TOP3AQ13472 1001 aaPredicted RBP5.32□□□□□ -1.56
VPS13A-212ENST00000493341 KRT32Q14532 448 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 KCNAB1Q14722 419 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 TARBP2Q15633 366 aaKnown RBP5.32□□□□□ -1.56
VPS13A-212ENST00000493341 EEF1AKMT2Q5JPI9 291 aaKnown RBP5.32□□□□□ -1.56
VPS13A-212ENST00000493341 UTP14CQ5TAP6 766 aaKnown RBP5.32□□□□□ -1.56
VPS13A-212ENST00000493341 FYB2Q5VWT5 728 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 OTUD7BQ6GQQ9 843 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 ZNF365Q70YC5 407 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 SLC44A2Q8IWA5 706 aaPredicted RBP5.32□□□□□ -1.56
VPS13A-212ENST00000493341 ANKRD53Q8N9V6 530 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 KYQ8NBH2 561 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 SLC35B2Q8TB61 432 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 KIRREL1Q96J84 757 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 TRAPPC9Q96Q05 1148 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 TINAGL1Q9GZM7 467 aaPredicted RBP5.32□□□□□ -1.56
VPS13A-212ENST00000493341 KIAA1683Q9H0B3 1180 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 JKAMPQ9P055 326 aa5.32□□□□□ -1.56
VPS13A-212ENST00000493341 ORC4O43929 436 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 CYP7B1O75881 506 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 SASH1O94885 1247 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 PIM1P11309 404 aaPredicted RBP5.31□□□□□ -1.56
VPS13A-212ENST00000493341 ALDH18A1P54886 795 aaKnown RBP5.31□□□□□ -1.56
VPS13A-212ENST00000493341 CASP6P55212 293 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 BPIFB4P59827 614 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 SRSF3P84103 164 aaKnown RBP5.31□□□□□ -1.56
VPS13A-212ENST00000493341 SCAPQ12770 1279 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 CCDC96Q2M329 555 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 PLA1AQ53H76 456 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 ATPAF1Q5TC12 328 aaPredicted RBP5.31□□□□□ -1.56
VPS13A-212ENST00000493341 PLAG1Q6DJT9 500 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 USP17L6PQ6QN14 398 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 NFXL1Q6ZNB6 911 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 FAM46DQ8NEK8 389 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 NLGN4YQ8NFZ3 816 aaPredicted RBP5.31□□□□□ -1.56
VPS13A-212ENST00000493341 CEP70Q8NHQ1 597 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 GOLGA1Q92805 767 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 ZUFSPQ96AP4 578 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 ZBTB8AQ96BR9 441 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 RPL10LQ96L21 214 aaKnown RBP5.31□□□□□ -1.56
VPS13A-212ENST00000493341 SDF4Q9BRK5 362 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 NDC1Q9BTX1 674 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 DDX23Q9BUQ8 820 aaKnown RBP5.31□□□□□ -1.56
VPS13A-212ENST00000493341 CPEB1Q9BZB8 566 aaKnown RBP5.31□□□□□ -1.56
VPS13A-212ENST00000493341 PCDH18Q9HCL0 1135 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 HELLSQ9NRZ9 838 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 TMEM160Q9NX00 188 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 ZSCAN32Q9NX65 697 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 CTDP1Q9Y5B0 961 aaPredicted RBP5.31□□□□□ -1.56
VPS13A-212ENST00000493341 ZBED4O75132 1171 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 KRT38O76015 456 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 KIF20AO95235 890 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 ANXA1P04083 346 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 SRGAP2BP0DMP2 458 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 PTDSS1P48651 473 aaKnown RBP5.31□□□□□ -1.56
VPS13A-212ENST00000493341 ACTR2P61160 394 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 RAP2BP61225 183 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 DCAF7P61962 342 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 ATP2C1P98194 919 aaPredicted RBP5.31□□□□□ -1.56
VPS13A-212ENST00000493341 ARHGEF7Q14155 803 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 CCNG2Q16589 344 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 ZNF792Q3KQV3 632 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 CCDC184Q52MB2 194 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 FAXCQ5TGI0 409 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 PDXDC1Q6P996 788 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 SEM1Q6ZVN7 128 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 B3GNT8Q7Z7M8 397 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 ZNF605Q86T29 641 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 ANKRD52Q8NB46 1076 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 SLC17A8Q8NDX2 589 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 OR6Y1Q8NGX8 325 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 CPT1CQ8TCG5 803 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 SMCR8Q8TEV9 937 aaPredicted RBP5.31□□□□□ -1.56
VPS13A-212ENST00000493341 DDX17Q92841 729 aaKnown RBP5.31□□□□□ -1.56
VPS13A-212ENST00000493341 PAIP1Q9H074 479 aaKnown RBP5.31□□□□□ -1.56
VPS13A-212ENST00000493341 BRD8Q9H0E9 1235 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 KCNH6Q9H252 994 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 GSTO2Q9H4Y5 243 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 GPR35Q9HC97 309 aa5.31□□□□□ -1.56
VPS13A-212ENST00000493341 A0A087X0M5 115 aa5.3□□□□□ -1.56
VPS13A-212ENST00000493341 A0A1B0GX30 115 aa5.3□□□□□ -1.56
VPS13A-212ENST00000493341 CXorf49A8MYA2 514 aaPredicted RBP5.3□□□□□ -1.56
VPS13A-212ENST00000493341 NRP1O14786 923 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms