RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 MAP3K6O95382 1288 aa13.16□□□□□ -0.3
HMGN1-220ENST00000492280 GDF10P55107 478 aa13.16□□□□□ -0.3
HMGN1-220ENST00000492280 KCTD2Q14681 263 aa13.16□□□□□ -0.3
HMGN1-220ENST00000492280 PRRT2Q7Z6L0 340 aaPredicted RBP13.16□□□□□ -0.3
HMGN1-220ENST00000492280 ERICH1Q86X53 443 aa13.16□□□□□ -0.3
HMGN1-220ENST00000492280 SRRM1Q8IYB3 904 aaKnown RBP13.16□□□□□ -0.3
HMGN1-220ENST00000492280 KATNAL2Q8IYT4 538 aa13.16□□□□□ -0.3
HMGN1-220ENST00000492280 OPTNQ96CV9 577 aa13.16□□□□□ -0.3
HMGN1-220ENST00000492280 THOC1Q96FV9 657 aaKnown RBP13.16□□□□□ -0.3
HMGN1-220ENST00000492280 CHMP6Q96FZ7 201 aa13.16□□□□□ -0.3
HMGN1-220ENST00000492280 CPXM1Q96SM3 734 aa13.16□□□□□ -0.3
HMGN1-220ENST00000492280 FDXACB1Q9BRP7 624 aaPredicted RBP13.16□□□□□ -0.3
HMGN1-220ENST00000492280 WHRNQ9P202 907 aa13.16□□□□□ -0.3
HMGN1-220ENST00000492280 SCINQ9Y6U3 715 aa13.16□□□□□ -0.3
HMGN1-220ENST00000492280 C1QBPQ07021 282 aaKnown RBP13.16□□□□□ -0.3
HMGN1-220ENST00000492280 GPS1Q13098 491 aa13.16□□□□□ -0.3
HMGN1-220ENST00000492280 SH3PXD2AQ5TCZ1 1133 aa13.16□□□□□ -0.3
HMGN1-220ENST00000492280 ZPBP2Q6X784 338 aa13.16□□□□□ -0.3
HMGN1-220ENST00000492280 C1orf127Q8N9H9 656 aa13.16□□□□□ -0.3
HMGN1-220ENST00000492280 FAM81BQ96LP2 452 aa13.16□□□□□ -0.3
HMGN1-220ENST00000492280 ELAC2Q9BQ52 826 aaKnown RBP13.16□□□□□ -0.3
HMGN1-220ENST00000492280 METTL5Q9NRN9 209 aaKnown RBP13.16□□□□□ -0.3
HMGN1-220ENST00000492280 SCN1AP35498 2009 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 GOLGA6L7A0A1B0GV03 622 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 DNM1LO00429 736 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 TTC4O95801 387 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 ARSEP51690 589 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 TMED2Q15363 201 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 C6orf118Q5T5N4 469 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 IER5Q5VY09 327 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 CDCA2Q69YH5 1023 aaPredicted RBP13.15□□□□□ -0.3
HMGN1-220ENST00000492280 JADE1Q6IE81 842 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 MPZL3Q6UWV2 235 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 VSTM1Q6UX27 236 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 CACNA2D3Q8IZS8 1091 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 ARFGAP1Q8N6T3 406 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 UBA3Q8TBC4 463 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 DYDC1Q8WWB3 177 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 RBM15Q96T37 977 aaKnown RBP eCLIP13.15□□□□□ -0.3
HMGN1-220ENST00000492280 TRAIPQ9BWF2 469 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 SAYSD1Q9NPB0 183 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 NEU2Q9Y3R4 380 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 A6NNZ2 444 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 LIASO43766 372 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 AGTP01019 485 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 PSMA2P25787 234 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 MBTD1Q05BQ5 628 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 MCL1Q07820 350 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 TUBB8Q3ZCM7 444 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 KCNV1Q6PIU1 500 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 SPOCD1Q6ZMY3 1216 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 ANKMY2Q8IV38 441 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 EXD1Q8NHP7 514 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 ZNF317Q96PQ6 595 aaPredicted RBP13.15□□□□□ -0.3
HMGN1-220ENST00000492280 SYNCQ9H7C4 482 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 IP6K2Q9UHH9 426 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 CNTN6Q9UQ52 1028 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 AKT3Q9Y243 479 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 SBF1O95248 1867 aa13.15□□□□□ -0.3
HMGN1-220ENST00000492280 HTTP42858 3142 aa13.15□□□□□ -0.31
HMGN1-220ENST00000492280 TCRBV5S1A1TA0A578 114 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 LACTBL1A8MY62 500 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 SPAG7O75391 227 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 ERBB2P04626 1255 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 PAEPP09466 180 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 INSRRP14616 1297 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 PECAM1P16284 738 aaPredicted RBP13.14□□□□□ -0.31
HMGN1-220ENST00000492280 ITIH2P19823 946 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 IBSPP21815 317 aaPredicted RBP13.14□□□□□ -0.31
HMGN1-220ENST00000492280 KLRC2P26717 231 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 CDO1Q16878 200 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 C6orf89Q6UWU4 347 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 TRIM72Q6ZMU5 477 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 CCDC121Q6ZUS5 278 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 CCDC13Q8IYE1 715 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 TMEM35BQ8NCS4 154 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 CDCA5Q96FF9 252 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 FGFR1OP2Q9NVK5 253 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.14□□□□□ -0.31
HMGN1-220ENST00000492280 POC1B-GALNT4F8VUJ3 575 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 SGK1O00141 431 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 GJA5P36382 358 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 IREB2P48200 963 aaKnown RBP13.14□□□□□ -0.31
HMGN1-220ENST00000492280 EFNA5P52803 228 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 PSMC1P62191 440 aaKnown RBP13.14□□□□□ -0.31
HMGN1-220ENST00000492280 CNGA2Q16280 664 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 GKAP1Q5VSY0 366 aaPredicted RBP13.14□□□□□ -0.31
HMGN1-220ENST00000492280 CCDC125Q86Z20 511 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 HSPH1Q92598 858 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 SLCO2A1Q92959 643 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 LPIN3Q9BQK8 851 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 PPP2R3BQ9Y5P8 575 aa13.14□□□□□ -0.31
HMGN1-220ENST00000492280 HCRTO43612 131 aa13.13□□□□□ -0.31
HMGN1-220ENST00000492280 LRCH4O75427 683 aa13.13□□□□□ -0.31
HMGN1-220ENST00000492280 TNNC2P02585 160 aa13.13□□□□□ -0.31
HMGN1-220ENST00000492280 EFTUD2Q15029 972 aaKnown RBP eCLIP13.13□□□□□ -0.312e-22■■■■■ 48.1
HMGN1-220ENST00000492280 CCNG2Q16589 344 aa13.13□□□□□ -0.31
HMGN1-220ENST00000492280 SGSM1Q2NKQ1 1148 aa13.13□□□□□ -0.31
HMGN1-220ENST00000492280 EAPPQ56P03 285 aaPredicted RBP13.13□□□□□ -0.31
HMGN1-220ENST00000492280 CCDC33Q8N5R6 958 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms