RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 LRRN2O75325 713 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 TBX10O75333 385 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 PDGFRBP09619 1106 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 WEE2P0C1S8 567 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 SPATA31D3P0C874 917 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 ATF2P15336 505 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 ZNF18P17022 549 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 HOXB8P17481 243 aaPredicted RBP11.62□□□□□ -0.55
VPS13D-210ENST00000489961 KCNA5P22460 613 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 TBXAS1P24557 533 aaPredicted RBP11.62□□□□□ -0.55
VPS13D-210ENST00000489961 ACAT1P24752 427 aaKnown RBP11.62□□□□□ -0.55
VPS13D-210ENST00000489961 LTBRP36941 435 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 ASPAP45381 313 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 CDH8P55286 799 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 YWHAEP62258 255 aaKnown RBP11.62□□□□□ -0.55
VPS13D-210ENST00000489961 RBM10P98175 930 aaKnown RBP11.62□□□□□ -0.55
VPS13D-210ENST00000489961 ADCY1Q08828 1119 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 LRMPQ12912 555 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 IQCB1Q15051 598 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 KRT31Q15323 416 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 MAPRE1Q15691 268 aaKnown RBP11.62□□□□□ -0.55
VPS13D-210ENST00000489961 SLC39A12Q504Y0 691 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 INTS6LQ5JSJ4 861 aaKnown RBP11.62□□□□□ -0.55
VPS13D-210ENST00000489961 MIIPQ5JXC2 388 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 ANKRD54Q6NXT1 300 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 RNF19BQ6ZMZ0 732 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 SPATA31D4Q6ZUB0 917 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 CCDC149Q6ZUS6 474 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 RTL10Q7L3V2 364 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 C2orf15Q8WU43 125 aaKnown RBP11.62□□□□□ -0.55
VPS13D-210ENST00000489961 TATDN2Q93075 761 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 TMEM209Q96SK2 561 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 SYT15Q9BQS2 421 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 INTS2Q9H0H0 1204 aaKnown RBP11.62□□□□□ -0.55
VPS13D-210ENST00000489961 FAM124BQ9H5Z6 455 aaPredicted RBP11.62□□□□□ -0.55
VPS13D-210ENST00000489961 SFXN1Q9H9B4 322 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 CBX8Q9HC52 389 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 TAB2Q9NYJ8 693 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 LIMA1Q9UHB6 759 aaKnown RBP11.62□□□□□ -0.55
VPS13D-210ENST00000489961 CDH23Q9H251 3354 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 MTMR11A4FU01 709 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 C8AP07357 584 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 LMO2P25791 158 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 COPB1P53618 953 aaKnown RBP11.61□□□□□ -0.55
VPS13D-210ENST00000489961 DLX2Q07687 328 aaPredicted RBP11.61□□□□□ -0.55
VPS13D-210ENST00000489961 CUL2Q13617 745 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 NFE2Q16621 373 aaPredicted RBP11.61□□□□□ -0.55
VPS13D-210ENST00000489961 EXOC3L4Q17RC7 722 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 AAK1Q2M2I8 961 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 UVSSAQ2YD98 709 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 PPM1LQ5SGD2 360 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 FKBP15Q5T1M5 1219 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 LUZP1Q86V48 1076 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 UNC93AQ86WB7 457 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 PPM1KQ8N3J5 372 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 LMO3Q8TAP4 145 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 FAM200AQ8TCP9 573 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 SPPL2BQ8TCT7 592 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 TNIP3Q96KP6 325 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 FAM81BQ96LP2 452 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 PGLYRP2Q96PD5 576 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 CRACR2AQ9BSW2 395 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 SDCBP2Q9H190 292 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 VPS16Q9H269 839 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 CYP4F11Q9HBI6 524 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 ZDHHC7Q9NXF8 308 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 CLEC1BQ9P126 229 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 THEGQ9P2T0 379 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 CD207Q9UJ71 328 aa11.61□□□□□ -0.55
VPS13D-210ENST00000489961 H3BQ06 376 aaPredicted RBP11.6□□□□□ -0.55
VPS13D-210ENST00000489961 HCRTO43612 131 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 ZMYND10O75800 440 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 HNRNPA1P09651 372 aaKnown RBP eCLIP11.6□□□□□ -0.55
VPS13D-210ENST00000489961 PTPN1P18031 435 aaKnown RBP11.6□□□□□ -0.55
VPS13D-210ENST00000489961 CD58P19256 250 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 HOXA9P31269 272 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 NDST1P52848 882 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 ZNF445P59923 1031 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 PSMC1P62191 440 aaKnown RBP11.6□□□□□ -0.55
VPS13D-210ENST00000489961 ITIH3Q06033 890 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 INCA1Q0VD86 236 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 CLUL1Q15846 466 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 LEXMQ3ZCV2 418 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 RARS2Q5T160 578 aaKnown RBP11.6□□□□□ -0.55
VPS13D-210ENST00000489961 CES5AQ6NT32 575 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 SYCE2Q6PIF2 218 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 TRIM65Q6PJ69 517 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 CYP26C1Q6V0L0 522 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 C4orf50Q6ZRC1 276 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 LRRTM3Q86VH5 581 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 TCEAL8Q8IYN2 117 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 SLC7A14Q8TBB6 771 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 MSLNLQ96KJ4 702 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 NT5C1AQ9BXI3 368 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 HSD3B7Q9H2F3 369 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 PRDM6Q9NQX0 595 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 CISHQ9NSE2 258 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 ABI2Q9NYB9 513 aaPredicted RBP11.6□□□□□ -0.55
VPS13D-210ENST00000489961 HSFX1Q9UBD0 423 aa11.6□□□□□ -0.55
VPS13D-210ENST00000489961 GTF3C4Q9UKN8 822 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms