RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 CYP3A43Q9HB55 503 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.02□□□□□ -0.65
SKA1-204ENST00000488454 CHST7Q9NS84 486 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 POLIQ9UNA4 740 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.01□□□□□ -0.65
SKA1-204ENST00000488454 EPOPA6NHQ4 379 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 EFEMP2O95967 443 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 CYP11A1P05108 521 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 SLC9A1P19634 815 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 IGFBP4P22692 258 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 TBXAS1P24557 533 aaPredicted RBP11.01□□□□□ -0.65
SKA1-204ENST00000488454 DNAJB1P25685 340 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 PON1P27169 355 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 MFAP3P55082 362 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 PSMD5Q16401 504 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 SOWAHAQ2M3V2 549 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 CTXN3Q4LDR2 81 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 RTP2Q5QGT7 225 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 KIAA0319Q5VV43 1072 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 ZNF280DQ6N043 979 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 SCARA5Q6ZMJ2 495 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 GAS2L3Q86XJ1 694 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 RNF168Q8IYW5 571 aaPredicted RBP11.01□□□□□ -0.65
SKA1-204ENST00000488454 ADGRF2Q8IZF7 708 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 PPM1KQ8N3J5 372 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 PDCL2Q8N4E4 241 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 TTC39CQ8N584 583 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 LNX1Q8TBB1 728 aaPredicted RBP11.01□□□□□ -0.65
SKA1-204ENST00000488454 PIK3R5Q8WYR1 880 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 HLA-CQ95604 372 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 ELMO3Q96BJ8 720 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 THAP11Q96EK4 314 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 VN1R3Q9BXE9 311 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 APOBEC3GQ9HC16 384 aaKnown RBP11.01□□□□□ -0.65
SKA1-204ENST00000488454 LMCD1Q9NZU5 365 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 L1RE1Q9UN81 338 aa11.01□□□□□ -0.65
SKA1-204ENST00000488454 TDRD15B5MCY1 1934 aaKnown RBP11.01□□□□□ -0.65
SKA1-204ENST00000488454 RALGAPA2Q2PPJ7 1873 aa11□□□□□ -0.65
SKA1-204ENST00000488454 A0A1B0GTH6 734 aa11□□□□□ -0.65
SKA1-204ENST00000488454 OR6C75A6NL08 312 aa11□□□□□ -0.65
SKA1-204ENST00000488454 FSCN2O14926 492 aa11□□□□□ -0.65
SKA1-204ENST00000488454 LRRN2O75325 713 aa11□□□□□ -0.65
SKA1-204ENST00000488454 TACC1O75410 805 aa11□□□□□ -0.65
SKA1-204ENST00000488454 OAZ2O95190 189 aa11□□□□□ -0.65
SKA1-204ENST00000488454 WEE2P0C1S8 567 aa11□□□□□ -0.65
SKA1-204ENST00000488454 WARSP23381 471 aaKnown RBP11□□□□□ -0.65
SKA1-204ENST00000488454 KLRC2P26717 231 aa11□□□□□ -0.65
SKA1-204ENST00000488454 PCSK1P29120 753 aa11□□□□□ -0.65
SKA1-204ENST00000488454 GGCXP38435 758 aa11□□□□□ -0.65
SKA1-204ENST00000488454 CDH8P55286 799 aa11□□□□□ -0.65
SKA1-204ENST00000488454 ARPP19P56211 112 aa11□□□□□ -0.65
SKA1-204ENST00000488454 TSPY1Q01534 308 aa11□□□□□ -0.65
SKA1-204ENST00000488454 CUL2Q13617 745 aa11□□□□□ -0.65
SKA1-204ENST00000488454 NR1I3Q14994 352 aa11□□□□□ -0.65
SKA1-204ENST00000488454 SYCP1Q15431 976 aa11□□□□□ -0.65
SKA1-204ENST00000488454 UVSSAQ2YD98 709 aa11□□□□□ -0.65
SKA1-204ENST00000488454 TRIM65Q6PJ69 517 aa11□□□□□ -0.65
SKA1-204ENST00000488454 PRSS55Q6UWB4 352 aaPredicted RBP11□□□□□ -0.65
SKA1-204ENST00000488454 RRAGAQ7L523 313 aa11□□□□□ -0.65
SKA1-204ENST00000488454 ENOSF1Q7L5Y1 443 aa11□□□□□ -0.65
SKA1-204ENST00000488454 APTXQ7Z2E3 356 aaKnown RBP11□□□□□ -0.65
SKA1-204ENST00000488454 DEFB123Q8N688 67 aa11□□□□□ -0.65
SKA1-204ENST00000488454 LMO3Q8TAP4 145 aa11□□□□□ -0.65
SKA1-204ENST00000488454 AUTS2Q8WXX7 1259 aa11□□□□□ -0.65
SKA1-204ENST00000488454 NAP1L5Q96NT1 182 aaPredicted RBP11□□□□□ -0.65
SKA1-204ENST00000488454 SPSB2Q99619 263 aa11□□□□□ -0.65
SKA1-204ENST00000488454 LSM14BQ9BX40 385 aaKnown RBP11□□□□□ -0.65
SKA1-204ENST00000488454 SMYD3Q9H7B4 428 aa11□□□□□ -0.65
SKA1-204ENST00000488454 TLE6Q9H808 572 aa11□□□□□ -0.65
SKA1-204ENST00000488454 UBE2TQ9NPD8 197 aaPredicted RBP11□□□□□ -0.65
SKA1-204ENST00000488454 DDX43Q9NXZ2 648 aaKnown RBP11□□□□□ -0.65
SKA1-204ENST00000488454 IFNKQ9P0W0 207 aa11□□□□□ -0.65
SKA1-204ENST00000488454 FNIP2Q9P278 1114 aa11□□□□□ -0.65
SKA1-204ENST00000488454 BACE2Q9Y5Z0 518 aa11□□□□□ -0.65
SKA1-204ENST00000488454 TRIOBPQ9H2D6 2365 aa11□□□□□ -0.65
SKA1-204ENST00000488454 TRIP11Q15643 1979 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 LAMA2P24043 3122 aaKnown RBP10.99□□□□□ -0.65
SKA1-204ENST00000488454 C2orf71A6NGG8 1288 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 A8MXQ7 604 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 S1PR4O95977 384 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 ADH1AP07327 375 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 PDGFRBP09619 1106 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 CD58P19256 250 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 IRS1P35568 1242 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 ASPAP45381 313 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 RAP1GAPP47736 663 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 FXR1P51114 621 aaKnown RBP eCLIP10.99□□□□□ -0.65
SKA1-204ENST00000488454 GCNT1Q02742 428 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 KCNMA1Q12791 1236 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 CAMK1Q14012 370 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 MRPL58Q14197 206 aaKnown RBP10.99□□□□□ -0.65
SKA1-204ENST00000488454 PTPN14Q15678 1187 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 PHLDB3Q6NSJ2 640 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 PPFIBP1Q86W92 1011 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 DCP1BQ8IZD4 617 aaKnown RBP10.99□□□□□ -0.65
SKA1-204ENST00000488454 NEK11Q8NG66 645 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 JAKMIP2Q96AA8 810 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 TNIP3Q96KP6 325 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 ERGIC2Q96RQ1 377 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 ACBD6Q9BR61 282 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms