RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 ZNF277Q9NRM2 450 aaPredicted RBP4.53□□□□□ -1.68
SMC4-220ENST00000488017 SAP30BPQ9UHR5 308 aaKnown RBP4.53□□□□□ -1.68
SMC4-220ENST00000488017 H0YIZ8 118 aa4.52□□□□□ -1.69
SMC4-220ENST00000488017 QSOX1O00391 747 aa4.52□□□□□ -1.69
SMC4-220ENST00000488017 BCAR3O75815 825 aa4.52□□□□□ -1.69
SMC4-220ENST00000488017 AGXTP21549 392 aa4.52□□□□□ -1.69
SMC4-220ENST00000488017 ARHGAP25P42331 645 aa4.52□□□□□ -1.69
SMC4-220ENST00000488017 EEFSECP57772 596 aaKnown RBP4.52□□□□□ -1.69
SMC4-220ENST00000488017 RAB39AQ14964 217 aa4.52□□□□□ -1.69
SMC4-220ENST00000488017 PDSS2Q86YH6 399 aa4.52□□□□□ -1.69
SMC4-220ENST00000488017 CNGA4Q8IV77 575 aa4.52□□□□□ -1.69
SMC4-220ENST00000488017 FAM109AQ8N4B1 249 aa4.52□□□□□ -1.69
SMC4-220ENST00000488017 KLHDC4Q8TBB5 520 aa4.52□□□□□ -1.69
SMC4-220ENST00000488017 FAM136AQ96C01 138 aa4.52□□□□□ -1.69
SMC4-220ENST00000488017 ASB2Q96Q27 587 aa4.52□□□□□ -1.69
SMC4-220ENST00000488017 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.52□□□□□ -1.69
SMC4-220ENST00000488017 FAM90A10PA6NDY2 464 aa4.51□□□□□ -1.69
SMC4-220ENST00000488017 E5RJQ4 531 aa4.51□□□□□ -1.69
SMC4-220ENST00000488017 CHEK2O96017 543 aa4.51□□□□□ -1.69
SMC4-220ENST00000488017 ITGALP20701 1170 aa4.51□□□□□ -1.69
SMC4-220ENST00000488017 RBM20Q5T481 1227 aaKnown RBP4.51□□□□□ -1.69
SMC4-220ENST00000488017 DLK2Q6UY11 383 aa4.51□□□□□ -1.69
SMC4-220ENST00000488017 SLC30A10Q6XR72 485 aa4.51□□□□□ -1.69
SMC4-220ENST00000488017 STRA8Q7Z7C7 330 aa4.51□□□□□ -1.69
SMC4-220ENST00000488017 CHSY1Q86X52 802 aa4.51□□□□□ -1.69
SMC4-220ENST00000488017 NANOGP1Q8N7R0 232 aa4.51□□□□□ -1.69
SMC4-220ENST00000488017 C5orf34Q96MH7 638 aa4.51□□□□□ -1.69
SMC4-220ENST00000488017 ETAA1Q9NY74 926 aa4.51□□□□□ -1.69
SMC4-220ENST00000488017 DLL3Q9NYJ7 618 aa4.51□□□□□ -1.69
SMC4-220ENST00000488017 CALCOCO1Q9P1Z2 691 aa4.51□□□□□ -1.69
SMC4-220ENST00000488017 ERVV-2B6SEH9 535 aa4.5□□□□□ -1.69
SMC4-220ENST00000488017 FGBP02675 491 aa4.5□□□□□ -1.69
SMC4-220ENST00000488017 CD6P30203 668 aa4.5□□□□□ -1.69
SMC4-220ENST00000488017 ZNF280AP59817 542 aaPredicted RBP4.5□□□□□ -1.69
SMC4-220ENST00000488017 HOXA4Q00056 320 aaPredicted RBP4.5□□□□□ -1.69
SMC4-220ENST00000488017 LRRC41Q15345 812 aa4.5□□□□□ -1.69
SMC4-220ENST00000488017 TAF7LQ5H9L4 462 aa4.5□□□□□ -1.69
SMC4-220ENST00000488017 MIS18BP1Q6P0N0 1132 aa4.5□□□□□ -1.69
SMC4-220ENST00000488017 PNLDC1Q8NA58 520 aaKnown RBP4.5□□□□□ -1.69
SMC4-220ENST00000488017 PSD4Q8NDX1 1056 aa4.5□□□□□ -1.69
SMC4-220ENST00000488017 HDAC10Q969S8 669 aa4.5□□□□□ -1.69
SMC4-220ENST00000488017 VCPIP1Q96JH7 1222 aa4.5□□□□□ -1.69
SMC4-220ENST00000488017 CAMKK2Q96RR4 588 aa4.5□□□□□ -1.69
SMC4-220ENST00000488017 VPS33BQ9H267 617 aa4.5□□□□□ -1.69
SMC4-220ENST00000488017 RLIMQ9NVW2 624 aa4.5□□□□□ -1.69
SMC4-220ENST00000488017 TRNAU1APQ9NX07 287 aaKnown RBP4.5□□□□□ -1.69
SMC4-220ENST00000488017 ZNF112Q9UJU3 913 aa4.5□□□□□ -1.69
SMC4-220ENST00000488017 SH2B3Q9UQQ2 575 aa4.5□□□□□ -1.69
SMC4-220ENST00000488017 WDR17Q8IZU2 1322 aa4.49□□□□□ -1.69
SMC4-220ENST00000488017 OAZ2O95190 189 aa4.49□□□□□ -1.69
SMC4-220ENST00000488017 TMEM191BP0C7N4 346 aa4.49□□□□□ -1.69
SMC4-220ENST00000488017 CYP2C18P33260 490 aa4.49□□□□□ -1.69
SMC4-220ENST00000488017 HTRA4P83105 476 aaPredicted RBP4.49□□□□□ -1.69
SMC4-220ENST00000488017 TLE1Q04724 770 aa4.49□□□□□ -1.69
SMC4-220ENST00000488017 GTF2H3Q13889 308 aa4.49□□□□□ -1.69
SMC4-220ENST00000488017 Q4G0T1 1027 aa4.49□□□□□ -1.69
SMC4-220ENST00000488017 PCID2Q5JVF3 399 aa4.49□□□□□ -1.69
SMC4-220ENST00000488017 TAF2Q6P1X5 1199 aa4.49□□□□□ -1.69
SMC4-220ENST00000488017 GADL1Q6ZQY3 521 aa4.49□□□□□ -1.69
SMC4-220ENST00000488017 IRF2BP2Q7Z5L9 587 aa4.49□□□□□ -1.69
SMC4-220ENST00000488017 NPM2Q86SE8 214 aaKnown RBP4.49□□□□□ -1.69
SMC4-220ENST00000488017 DTX2Q86UW9 622 aa4.49□□□□□ -1.69
SMC4-220ENST00000488017 UBXN4Q92575 508 aa4.49□□□□□ -1.69
SMC4-220ENST00000488017 RAB24Q969Q5 203 aa4.49□□□□□ -1.69
SMC4-220ENST00000488017 MRGPRX4Q96LA9 322 aa4.49□□□□□ -1.69
SMC4-220ENST00000488017 SLC2A13Q96QE2 648 aa4.49□□□□□ -1.69
SMC4-220ENST00000488017 CNPPD1Q9BV87 410 aa4.49□□□□□ -1.69
SMC4-220ENST00000488017 PDGFCQ9NRA1 345 aa4.49□□□□□ -1.69
SMC4-220ENST00000488017 STAT4Q14765 748 aa4.48□□□□□ -1.69
SMC4-220ENST00000488017 NRACQ8N912 160 aa4.48□□□□□ -1.69
SMC4-220ENST00000488017 C16orf52Q8NHV5 167 aa4.48□□□□□ -1.69
SMC4-220ENST00000488017 COQ8BQ96D53 544 aa4.48□□□□□ -1.69
SMC4-220ENST00000488017 SMOC2Q9H3U7 446 aa4.48□□□□□ -1.69
SMC4-220ENST00000488017 SERHLQ9NQF3 203 aa4.48□□□□□ -1.69
SMC4-220ENST00000488017 SIDT1Q9NXL6 827 aaKnown RBP4.48□□□□□ -1.69
SMC4-220ENST00000488017 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.48□□□□□ -1.69
SMC4-220ENST00000488017 PCDHA13Q9Y5I0 950 aa4.48□□□□□ -1.69
SMC4-220ENST00000488017 MRPL42Q9Y6G3 142 aaKnown RBP4.48□□□□□ -1.69
SMC4-220ENST00000488017 H7C1Q1 480 aa4.47□□□□□ -1.69
SMC4-220ENST00000488017 SLC16A3O15427 465 aaKnown RBP4.47□□□□□ -1.69
SMC4-220ENST00000488017 TLR5O60602 858 aa4.47□□□□□ -1.69
SMC4-220ENST00000488017 SCP2P22307 547 aa4.47□□□□□ -1.69
SMC4-220ENST00000488017 CYP2C19P33261 490 aa4.47□□□□□ -1.69
SMC4-220ENST00000488017 SOX5P35711 763 aa4.47□□□□□ -1.69
SMC4-220ENST00000488017 THBS3P49746 956 aa4.47□□□□□ -1.69
SMC4-220ENST00000488017 CYP4F2P78329 520 aa4.47□□□□□ -1.69
SMC4-220ENST00000488017 TCF15Q12870 199 aa4.47□□□□□ -1.69
SMC4-220ENST00000488017 HABP2Q14520 560 aaPredicted RBP4.47□□□□□ -1.69
SMC4-220ENST00000488017 TRIM72Q6ZMU5 477 aa4.47□□□□□ -1.69
SMC4-220ENST00000488017 ZC3H10Q96K80 434 aaKnown RBP4.47□□□□□ -1.69
SMC4-220ENST00000488017 SIK2Q9H0K1 926 aa4.47□□□□□ -1.69
SMC4-220ENST00000488017 CAAP1Q9H8G2 361 aa4.47□□□□□ -1.69
SMC4-220ENST00000488017 BRD9Q9H8M2 597 aa4.47□□□□□ -1.69
SMC4-220ENST00000488017 DUSP22Q9NRW4 184 aa4.47□□□□□ -1.69
SMC4-220ENST00000488017 WASHC2AQ641Q2 1341 aa4.46□□□□□ -1.69
SMC4-220ENST00000488017 PRKD3O94806 890 aa4.46□□□□□ -1.7
SMC4-220ENST00000488017 TMPRSS15P98073 1019 aa4.46□□□□□ -1.7
SMC4-220ENST00000488017 KRTAP27-1Q3LI81 207 aa4.46□□□□□ -1.7
SMC4-220ENST00000488017 CCDC93Q567U6 631 aa4.46□□□□□ -1.7
SMC4-220ENST00000488017 VPS53Q5VIR6 699 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms