RNA–Protein interactions for RNA: ENST00000487747.5

SMC4-219, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 637 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-219ENST00000487747 FXR1P51114 621 aaKnown RBP eCLIP5.57□□□□□ -1.52
SMC4-219ENST00000487747 GNAI1P63096 354 aa5.57□□□□□ -1.52
SMC4-219ENST00000487747 SSBP2P81877 361 aaPredicted RBP5.57□□□□□ -1.52
SMC4-219ENST00000487747 SP2Q02086 613 aa5.57□□□□□ -1.52
SMC4-219ENST00000487747 KIF22Q14807 665 aa5.57□□□□□ -1.52
SMC4-219ENST00000487747 ZNF66Q6ZN08 573 aa5.57□□□□□ -1.52
SMC4-219ENST00000487747 PPP1R32Q7Z5V6 425 aa5.57□□□□□ -1.52
SMC4-219ENST00000487747 C3orf20Q8ND61 904 aa5.57□□□□□ -1.52
SMC4-219ENST00000487747 REPS1Q96D71 796 aa5.57□□□□□ -1.52
SMC4-219ENST00000487747 CNPPD1Q9BV87 410 aa5.57□□□□□ -1.52
SMC4-219ENST00000487747 ALG8Q9BVK2 526 aa5.57□□□□□ -1.52
SMC4-219ENST00000487747 TINAGL1Q9GZM7 467 aaPredicted RBP5.57□□□□□ -1.52
SMC4-219ENST00000487747 TMX1Q9H3N1 280 aa5.57□□□□□ -1.52
SMC4-219ENST00000487747 RLIMQ9NVW2 624 aa5.57□□□□□ -1.52
SMC4-219ENST00000487747 EHD3Q9NZN3 535 aa5.57□□□□□ -1.52
SMC4-219ENST00000487747 FLRT1Q9NZU1 646 aa5.57□□□□□ -1.52
SMC4-219ENST00000487747 SBNO2Q9Y2G9 1366 aa5.56□□□□□ -1.52
SMC4-219ENST00000487747 ZNF213O14771 459 aa5.56□□□□□ -1.52
SMC4-219ENST00000487747 RPLP2P05387 115 aaKnown RBP5.56□□□□□ -1.52
SMC4-219ENST00000487747 RARBP10826 455 aa5.56□□□□□ -1.52
SMC4-219ENST00000487747 TCF15Q12870 199 aa5.56□□□□□ -1.52
SMC4-219ENST00000487747 GRM1Q13255 1194 aa5.56□□□□□ -1.52
SMC4-219ENST00000487747 LLGL1Q15334 1064 aa5.56□□□□□ -1.52
SMC4-219ENST00000487747 EZH2Q15910 746 aaKnown RBP5.56□□□□□ -1.52
SMC4-219ENST00000487747 MTX3Q5HYI7 312 aa5.56□□□□□ -1.52
SMC4-219ENST00000487747 ZNF626Q68DY1 528 aa5.56□□□□□ -1.52
SMC4-219ENST00000487747 USP37Q86T82 979 aa5.56□□□□□ -1.52
SMC4-219ENST00000487747 PPP1R3BQ86XI6 285 aa5.56□□□□□ -1.52
SMC4-219ENST00000487747 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.56□□□□□ -1.52
SMC4-219ENST00000487747 KLHDC4Q8TBB5 520 aa5.56□□□□□ -1.52
SMC4-219ENST00000487747 TNPO1Q92973 898 aaKnown RBP5.56□□□□□ -1.52
SMC4-219ENST00000487747 FAM136AQ96C01 138 aa5.56□□□□□ -1.52
SMC4-219ENST00000487747 ABCF2Q9UG63 623 aa5.56□□□□□ -1.52
SMC4-219ENST00000487747 LATS1O95835 1130 aa5.55□□□□□ -1.52
SMC4-219ENST00000487747 CHEK2O96017 543 aa5.55□□□□□ -1.52
SMC4-219ENST00000487747 AHSGP02765 367 aa5.55□□□□□ -1.52
SMC4-219ENST00000487747 PRR35P0CG20 571 aa5.55□□□□□ -1.52
SMC4-219ENST00000487747 ITGALP20701 1170 aa5.55□□□□□ -1.52
SMC4-219ENST00000487747 PDCP20941 246 aa5.55□□□□□ -1.52
SMC4-219ENST00000487747 CD6P30203 668 aa5.55□□□□□ -1.52
SMC4-219ENST00000487747 GCLCP48506 637 aaPredicted RBP5.55□□□□□ -1.52
SMC4-219ENST00000487747 NOGQ13253 232 aa5.55□□□□□ -1.52
SMC4-219ENST00000487747 BMPR2Q13873 1038 aa5.55□□□□□ -1.52
SMC4-219ENST00000487747 MAVSQ7Z434 540 aa5.55□□□□□ -1.52
SMC4-219ENST00000487747 HEATR3Q7Z4Q2 680 aa5.55□□□□□ -1.52
SMC4-219ENST00000487747 Q8N9P0 234 aaPredicted RBP5.55□□□□□ -1.52
SMC4-219ENST00000487747 SH2D3AQ9BRG2 576 aa5.55□□□□□ -1.52
SMC4-219ENST00000487747 MRPL46Q9H2W6 279 aaKnown RBP5.55□□□□□ -1.52
SMC4-219ENST00000487747 GNL3LQ9NVN8 582 aaKnown RBP5.55□□□□□ -1.52
SMC4-219ENST00000487747 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.55□□□□□ -1.521e-8■■■■■ 54.3
SMC4-219ENST00000487747 RAD54BQ9Y620 910 aa5.55□□□□□ -1.52
SMC4-219ENST00000487747 WASHC2CQ9Y4E1 1318 aa5.54□□□□□ -1.52
SMC4-219ENST00000487747 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.54□□□□□ -1.52
SMC4-219ENST00000487747 M0QYG6 137 aa5.54□□□□□ -1.52
SMC4-219ENST00000487747 MPGP29372 298 aa5.54□□□□□ -1.52
SMC4-219ENST00000487747 ZNF134P52741 427 aa5.54□□□□□ -1.52
SMC4-219ENST00000487747 KLF9Q13886 244 aaPredicted RBP5.54□□□□□ -1.52
SMC4-219ENST00000487747 PROSER3Q2NL68 480 aa5.54□□□□□ -1.52
SMC4-219ENST00000487747 TMEM108Q6UXF1 575 aa5.54□□□□□ -1.52
SMC4-219ENST00000487747 ZNF551Q7Z340 670 aaPredicted RBP5.54□□□□□ -1.52
SMC4-219ENST00000487747 ZNF366Q8N895 744 aa5.54□□□□□ -1.52
SMC4-219ENST00000487747 SLC13A1Q9BZW2 595 aa5.54□□□□□ -1.52
SMC4-219ENST00000487747 ARHGEF3Q9NR81 526 aa5.54□□□□□ -1.52
SMC4-219ENST00000487747 TISP43B9A030 160 aa5.53□□□□□ -1.52
SMC4-219ENST00000487747 FAM163BP0C2L3 166 aa5.53□□□□□ -1.52
SMC4-219ENST00000487747 ITGB6P18564 788 aa5.53□□□□□ -1.52
SMC4-219ENST00000487747 LIPAP38571 399 aa5.53□□□□□ -1.52
SMC4-219ENST00000487747 CLCN2P51788 898 aa5.53□□□□□ -1.52
SMC4-219ENST00000487747 HK3P52790 923 aa5.53□□□□□ -1.52
SMC4-219ENST00000487747 KRTAP10-9P60411 292 aa5.53□□□□□ -1.52
SMC4-219ENST00000487747 SLC10A2Q12908 348 aaPredicted RBP5.53□□□□□ -1.52
SMC4-219ENST00000487747 PLAC9Q5JTB6 97 aa5.53□□□□□ -1.52
SMC4-219ENST00000487747 KIAA1614Q5VZ46 1190 aa5.53□□□□□ -1.52
SMC4-219ENST00000487747 SUMO4Q6EEV6 95 aa5.53□□□□□ -1.52
SMC4-219ENST00000487747 BHLHA9Q7RTU4 235 aa5.53□□□□□ -1.52
SMC4-219ENST00000487747 MIER2Q8N344 545 aa5.53□□□□□ -1.52
SMC4-219ENST00000487747 PRR18Q8N4B5 295 aa5.53□□□□□ -1.52
SMC4-219ENST00000487747 C9orf106Q8NAJ2 232 aa5.53□□□□□ -1.52
SMC4-219ENST00000487747 FAM46DQ8NEK8 389 aa5.53□□□□□ -1.52
SMC4-219ENST00000487747 SMAD5Q99717 465 aaKnown RBP5.53□□□□□ -1.52
SMC4-219ENST00000487747 QTRT1Q9BXR0 403 aaKnown RBP5.53□□□□□ -1.52
SMC4-219ENST00000487747 SH3BP4Q9P0V3 963 aa5.53□□□□□ -1.52
SMC4-219ENST00000487747 POLHQ9Y253 713 aa5.53□□□□□ -1.52
SMC4-219ENST00000487747 PCDHA1Q9Y5I3 950 aa5.53□□□□□ -1.52
SMC4-219ENST00000487747 ZNF804BA4D1E1 1349 aa5.52□□□□□ -1.53
SMC4-219ENST00000487747 H0YIZ8 118 aa5.52□□□□□ -1.53
SMC4-219ENST00000487747 SMIM22K7EJ46 135 aa5.52□□□□□ -1.53
SMC4-219ENST00000487747 DCLK1O15075 740 aa5.52□□□□□ -1.53
SMC4-219ENST00000487747 FTH1P19P0C7X4 201 aa5.52□□□□□ -1.53
SMC4-219ENST00000487747 NDUFB7P17568 137 aa5.52□□□□□ -1.53
SMC4-219ENST00000487747 MAP2K6P52564 334 aa5.52□□□□□ -1.53
SMC4-219ENST00000487747 C11orf87Q6NUJ2 197 aa5.52□□□□□ -1.53
SMC4-219ENST00000487747 CATIPQ7Z7H3 387 aa5.52□□□□□ -1.53
SMC4-219ENST00000487747 RGMAQ96B86 450 aa5.52□□□□□ -1.53
SMC4-219ENST00000487747 MACROD1Q9BQ69 325 aa5.52□□□□□ -1.53
SMC4-219ENST00000487747 ASPSCR1Q9BZE9 553 aa5.52□□□□□ -1.53
SMC4-219ENST00000487747 TTYH3Q9C0H2 523 aa5.52□□□□□ -1.53
SMC4-219ENST00000487747 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.52□□□□□ -1.53
SMC4-219ENST00000487747 DLL3Q9NYJ7 618 aa5.52□□□□□ -1.53
SMC4-219ENST00000487747 DNAJB5O75953 348 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms