RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 TJP2Q9UDY2 1190 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 DMGDHQ9UI17 866 aaKnown RBP17.16■□□□□ 0.34
COL7A1-210ENST00000487017 CCDC78A2IDD5 438 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 TRIM49D1C9J1S8 452 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 PYGLP06737 847 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 C2orf69Q8N8R5 385 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 CAND2O75155 1236 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 GIT2Q14161 759 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 BTNL9Q6UXG8 535 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 TAGAPQ8N103 731 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 ZNF280CQ8ND82 737 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 ZNF555Q8NEP9 628 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 RUBCNLQ9H714 662 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 ZNRF3Q9ULT6 936 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 PDGFRBP09619 1106 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 GRIK1P39086 918 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 CPA2P48052 419 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 VCPP55072 806 aaKnown RBP17.16■□□□□ 0.34
COL7A1-210ENST00000487017 CCDC85BQ15834 202 aaPredicted RBP17.16■□□□□ 0.34
COL7A1-210ENST00000487017 MROH9Q5TGP6 573 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 FASTKD5Q7L8L6 764 aaKnown RBP17.16■□□□□ 0.34
COL7A1-210ENST00000487017 FBXL16Q8N461 479 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 UBA3Q8TBC4 463 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 MAGEB2O15479 319 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 ZSCAN9O15535 394 aaPredicted RBP17.16■□□□□ 0.34
COL7A1-210ENST00000487017 HMOX2P30519 316 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 COBLL1Q53SF7 1204 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 SPATA2LQ8IUW3 424 aaPredicted RBP17.16■□□□□ 0.34
COL7A1-210ENST00000487017 PPP1R2P1Q96PQ5 205 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 FAM49BQ9NUQ9 324 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 FAM95CA0A1B0GW59 222 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 MUTP22033 750 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 KCNA4P22459 653 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 STIP1P31948 543 aaKnown RBP17.15■□□□□ 0.34
COL7A1-210ENST00000487017 GOLGA7BQ2TAP0 167 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 NUP93Q8N1F7 819 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 OR6J1Q8NGC5 347 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 ATP8B4Q8TF62 1192 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 ATG4AQ8WYN0 398 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 PRDM5Q9NQX1 630 aaPredicted RBP17.15■□□□□ 0.34
COL7A1-210ENST00000487017 CPB1P15086 417 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 SERPINB10P48595 397 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 PCYT1AP49585 367 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 CASP4P49662 377 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 CACNB2Q08289 660 aaPredicted RBP17.15■□□□□ 0.34
COL7A1-210ENST00000487017 ARID3BQ8IVW6 561 aaPredicted RBP17.15■□□□□ 0.34
COL7A1-210ENST00000487017 AGBL1Q96MI9 1066 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 E2F8A0AVK6 867 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 CD4P01730 458 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 HNRNPCP07910 306 aaKnown RBP eCLIP17.15■□□□□ 0.34
COL7A1-210ENST00000487017 UBTFL6P0CB48 400 aaPredicted RBP17.15■□□□□ 0.34
COL7A1-210ENST00000487017 ZNF571Q7Z3V5 609 aaPredicted RBP17.15■□□□□ 0.34
COL7A1-210ENST00000487017 ZNF507Q8TCN5 953 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 FAM111AQ96PZ2 611 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 ACCSLQ4AC99 568 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 IER5Q5VY09 327 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 ACSF2Q96CM8 615 aaPredicted RBP17.15■□□□□ 0.34
COL7A1-210ENST00000487017 PIK3C2BO00750 1634 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 ACADSP16219 412 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 MAP4P27816 1152 aaKnown RBP17.15■□□□□ 0.34
COL7A1-210ENST00000487017 CHRNA5P30532 468 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 RBM46Q8TBY0 533 aaKnown RBP17.15■□□□□ 0.34
COL7A1-210ENST00000487017 TARS2Q9BW92 718 aaKnown RBP17.15■□□□□ 0.34
COL7A1-210ENST00000487017 KDM4CQ9H3R0 1056 aa17.15■□□□□ 0.34
COL7A1-210ENST00000487017 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.15■□□□□ 0.34
COL7A1-210ENST00000487017 C16orf96A6NNT2 1141 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 O00370 1275 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 KLRK1P26718 216 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 ITPK1Q13572 414 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 LAMB3Q13751 1172 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 NT5DC1Q5TFE4 455 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 NLRP9Q7RTR0 991 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 ELMOD1Q8N336 334 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 CALML6Q8TD86 181 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 KRT16P08779 473 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 HSPA1AP0DMV8 641 aaKnown RBP17.14■□□□□ 0.33
COL7A1-210ENST00000487017 HSPA1BP0DMV9 641 aaKnown RBP17.14■□□□□ 0.33
COL7A1-210ENST00000487017 GZMAP12544 262 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 OVGP1Q12889 678 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 PKN1Q16512 942 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 GALNT4Q8N4A0 578 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 PRMT7Q9NVM4 692 aaPredicted RBP17.14■□□□□ 0.33
COL7A1-210ENST00000487017 DLGAP2Q9P1A6 1054 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 CYP11B1P15538 503 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 COPAP53621 1224 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 ST3GAL1Q11201 340 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 ZC4H2Q9NQZ6 224 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 RAB21Q9UL25 225 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 GLI1P08151 1106 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 SARSP49591 514 aaKnown RBP17.14■□□□□ 0.33
COL7A1-210ENST00000487017 CDC42EP4Q9H3Q1 356 aaKnown RBP17.14■□□□□ 0.33
COL7A1-210ENST00000487017 PCDHGB4Q9UN71 923 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 ZNF711Q9Y462 761 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 FAM205AQ6ZU69 1335 aa17.14■□□□□ 0.33
COL7A1-210ENST00000487017 ITSN1Q15811 1721 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 F8VZ95 297 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 NNMTP40261 264 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 BOLA3Q53S33 107 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 EFHC1Q5JVL4 640 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 SCFD2Q8WU76 684 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms