RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 VAV2P52735 878 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 CDH8P55286 799 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 BCAR1P56945 870 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 DEFB103AP81534 67 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 FMO1Q01740 532 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 BTG3Q14201 252 aaPredicted RBP10.81□□□□□ -0.68
USP39-215ENST00000481409 SCARA3Q6AZY7 606 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 LCLAT1Q6UWP7 414 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 CD300LGQ6UXG3 332 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 NOP9Q86U38 636 aaKnown RBP10.81□□□□□ -0.68
USP39-215ENST00000481409 SLC4A11Q8NBS3 891 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 C3orf58Q8NDZ4 430 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 NOX5Q96PH1 765 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.81□□□□□ -0.68
USP39-215ENST00000481409 ISCUQ9H1K1 167 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 PDCL3Q9H2J4 239 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 CYLDQ9NQC7 956 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.81□□□□□ -0.68
USP39-215ENST00000481409 NENFQ9UMX5 172 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 SSX2IPQ9Y2D8 614 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 PPP2R2CQ9Y2T4 447 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 A0A087X0T9 212 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 ANKRD62A6NC57 917 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 OR6C75A6NL08 312 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 KIF2AO00139 706 aaPredicted RBP10.8□□□□□ -0.68
USP39-215ENST00000481409 DDX3XO00571 662 aaKnown RBP eCLIP10.8□□□□□ -0.68
USP39-215ENST00000481409 PJA2O43164 708 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 CYP1A1P04798 512 aaPredicted RBP10.8□□□□□ -0.68
USP39-215ENST00000481409 PLEKP08567 350 aaPredicted RBP10.8□□□□□ -0.68
USP39-215ENST00000481409 FAM228BP0C875 321 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 PNMA6AP0CW24 399 aaPredicted RBP10.8□□□□□ -0.68
USP39-215ENST00000481409 UNGP13051 313 aaPredicted RBP10.8□□□□□ -0.68
USP39-215ENST00000481409 ATP2A2P16615 1042 aaKnown RBP10.8□□□□□ -0.68
USP39-215ENST00000481409 FGFR3P22607 806 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 MAGEA1P43355 309 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 SLC11A1P49279 550 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 SLC8A3P57103 927 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 TSPY1Q01534 308 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 CREMQ03060 361 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 CENPCQ03188 943 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 YWHAHQ04917 246 aaPredicted RBP10.8□□□□□ -0.68
USP39-215ENST00000481409 KIF5AQ12840 1032 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 IFI16Q16666 785 aaKnown RBP10.8□□□□□ -0.68
USP39-215ENST00000481409 CCDC122Q5T0U0 273 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 WSCD1Q658N2 575 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 OVOS1Q6IE37 1185 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 ACAD10Q6JQN1 1059 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 KCNT2Q6UVM3 1135 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 ANKS3Q6ZW76 656 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 GLYCTKQ8IVS8 523 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 HERC6Q8IVU3 1022 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 DCP1BQ8IZD4 617 aaKnown RBP10.8□□□□□ -0.68
USP39-215ENST00000481409 CCAR2Q8N163 923 aaKnown RBP10.8□□□□□ -0.68
USP39-215ENST00000481409 FIBCD1Q8N539 461 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 RNF10Q8N5U6 811 aaKnown RBP10.8□□□□□ -0.68
USP39-215ENST00000481409 TMEM35BQ8NCS4 154 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 STK32AQ8WU08 396 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 CLP1Q92989 425 aaKnown RBP10.8□□□□□ -0.68
USP39-215ENST00000481409 HEXIM2Q96MH2 286 aaKnown RBP10.8□□□□□ -0.68
USP39-215ENST00000481409 MRPL45Q9BRJ2 306 aaKnown RBP10.8□□□□□ -0.68
USP39-215ENST00000481409 PAAF1Q9BRP4 392 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 ZBED2Q9BTP6 218 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 PLVAPQ9BX97 442 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 ELOVL4Q9GZR5 314 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 DDX43Q9NXZ2 648 aaKnown RBP10.8□□□□□ -0.68
USP39-215ENST00000481409 MYO1AQ9UBC5 1043 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 HESX1Q9UBX0 185 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 DNAJB4Q9UDY4 337 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 LCMT1Q9UIC8 334 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.8□□□□□ -0.68
USP39-215ENST00000481409 PCDHB12Q9Y5F1 795 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 PCDHA13Q9Y5I0 950 aa10.8□□□□□ -0.68
USP39-215ENST00000481409 A0A0A6YYK5 440 aaPredicted RBP10.79□□□□□ -0.68
USP39-215ENST00000481409 ESPNB1AK53 854 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 O00370 1275 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 ZNF500O60304 480 aaPredicted RBP10.79□□□□□ -0.68
USP39-215ENST00000481409 EFEMP2O95967 443 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 MMEP08473 750 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 H2AFZP0C0S5 128 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 TMEM253P0C7T8 217 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 CD19P15391 556 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 CHRNB2P17787 502 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 PTPN1P18031 435 aaKnown RBP10.79□□□□□ -0.68
USP39-215ENST00000481409 NSFP46459 744 aaKnown RBP10.79□□□□□ -0.68
USP39-215ENST00000481409 RAP1GAPP47736 663 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 GSCP56915 257 aaPredicted RBP10.79□□□□□ -0.68
USP39-215ENST00000481409 PLCB3Q01970 1234 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 KRT17Q04695 432 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 GFPT1Q06210 699 aaPredicted RBP10.79□□□□□ -0.68
USP39-215ENST00000481409 MRPL58Q14197 206 aaKnown RBP10.79□□□□□ -0.68
USP39-215ENST00000481409 TCEAL1Q15170 157 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 CLEC16AQ2KHT3 1053 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 USP41Q3LFD5 358 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 ZNF394Q53GI3 561 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 SPOUT1Q5T280 376 aaKnown RBP10.79□□□□□ -0.68
USP39-215ENST00000481409 ZNF280DQ6N043 979 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 FUT10Q6P4F1 479 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 TOGARAM2Q6ZUX3 1019 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 H2AFVQ71UI9 128 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 KIAA1328Q86T90 577 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms