RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 LRRC3BQ96PB8 259 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 MTMR12Q9C0I1 747 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 TMEM206Q9H813 350 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 IL21Q9HBE4 155 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 PDE11AQ9HCR9 933 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 TMLHEQ9NVH6 421 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 SIX4Q9UIU6 781 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 FBXO4Q9UKT5 387 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 ITGA11Q9UKX5 1188 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 L1RE1Q9UN81 338 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 AGAP1Q9UPQ3 857 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 PIAS3Q9Y6X2 628 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 ZNF638Q14966 1978 aaKnown RBP20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 PTPRDP23468 1912 aa20.24■□□□□ 0.83
CCDC88B-206ENST00000473405 LAMTOR5O43504 91 aa20.24■□□□□ 0.83
CCDC88B-206ENST00000473405 FGF19O95750 216 aa20.24■□□□□ 0.83
CCDC88B-206ENST00000473405 LMNAP02545 664 aaKnown RBP20.24■□□□□ 0.83
CCDC88B-206ENST00000473405 HAPLN1P10915 354 aaPredicted RBP20.24■□□□□ 0.83
CCDC88B-206ENST00000473405 ZNF528Q3MIS6 628 aa20.24■□□□□ 0.83
CCDC88B-206ENST00000473405 CNNM4Q6P4Q7 775 aa20.24■□□□□ 0.83
CCDC88B-206ENST00000473405 GPIHBP1Q8IV16 184 aa20.24■□□□□ 0.83
CCDC88B-206ENST00000473405 ARID3BQ8IVW6 561 aaPredicted RBP20.24■□□□□ 0.83
CCDC88B-206ENST00000473405 GPD1LQ8N335 351 aa20.24■□□□□ 0.83
CCDC88B-206ENST00000473405 LRRC52Q8N7C0 313 aa20.24■□□□□ 0.83
CCDC88B-206ENST00000473405 SPPL2BQ8TCT7 592 aa20.24■□□□□ 0.83
CCDC88B-206ENST00000473405 DHX58Q96C10 678 aa20.24■□□□□ 0.83
CCDC88B-206ENST00000473405 ATXN3LQ9H3M9 355 aa20.24■□□□□ 0.83
CCDC88B-206ENST00000473405 CUEDC2Q9H467 287 aa20.24■□□□□ 0.83
CCDC88B-206ENST00000473405 ABI2Q9NYB9 513 aaPredicted RBP20.24■□□□□ 0.83
CCDC88B-206ENST00000473405 MRPS17Q9Y2R5 130 aaKnown RBP20.24■□□□□ 0.83
CCDC88B-206ENST00000473405 GREB1Q4ZG55 1949 aa20.23■□□□□ 0.83
CCDC88B-206ENST00000473405 MAN2B1O00754 1011 aa20.23■□□□□ 0.83
CCDC88B-206ENST00000473405 ZNF263O14978 683 aa20.23■□□□□ 0.83
CCDC88B-206ENST00000473405 CUTAO60888 179 aa20.23■□□□□ 0.83
CCDC88B-206ENST00000473405 PRAMEF12O95522 483 aa20.23■□□□□ 0.83
CCDC88B-206ENST00000473405 CYP4F8P98187 520 aa20.23■□□□□ 0.83
CCDC88B-206ENST00000473405 SMARCB1Q12824 385 aa20.23■□□□□ 0.83
CCDC88B-206ENST00000473405 VEPH1Q14D04 833 aa20.23■□□□□ 0.83
CCDC88B-206ENST00000473405 GPR158Q5T848 1215 aa20.23■□□□□ 0.83
CCDC88B-206ENST00000473405 FOXD4L5Q5VV16 416 aaPredicted RBP20.23■□□□□ 0.83
CCDC88B-206ENST00000473405 EPM2AIP1Q7L775 607 aaPredicted RBP20.23■□□□□ 0.83
CCDC88B-206ENST00000473405 FAM200AQ8TCP9 573 aa20.23■□□□□ 0.83
CCDC88B-206ENST00000473405 NOC3LQ8WTT2 800 aaKnown RBP20.23■□□□□ 0.83
CCDC88B-206ENST00000473405 CACTINQ8WUQ7 758 aaKnown RBP20.23■□□□□ 0.83
CCDC88B-206ENST00000473405 FOXD4L4Q8WXT5 416 aaPredicted RBP20.23■□□□□ 0.83
CCDC88B-206ENST00000473405 PRMT8Q9NR22 394 aaPredicted RBP20.23■□□□□ 0.83
CCDC88B-206ENST00000473405 NDRG2Q9UN36 371 aaKnown RBP20.23■□□□□ 0.83
CCDC88B-206ENST00000473405 TULP1O00294 542 aaPredicted RBP20.22■□□□□ 0.83
CCDC88B-206ENST00000473405 CHADO15335 359 aa20.22■□□□□ 0.83
CCDC88B-206ENST00000473405 NCAM2O15394 837 aa20.22■□□□□ 0.83
CCDC88B-206ENST00000473405 BFSP1Q12934 665 aa20.22■□□□□ 0.83
CCDC88B-206ENST00000473405 MTAPQ13126 283 aa20.22■□□□□ 0.83
CCDC88B-206ENST00000473405 CCDC142Q17RM4 750 aa20.22■□□□□ 0.83
CCDC88B-206ENST00000473405 LMBRD2Q68DH5 695 aaPredicted RBP20.22■□□□□ 0.83
CCDC88B-206ENST00000473405 TMEM150AQ86TG1 271 aa20.22■□□□□ 0.83
CCDC88B-206ENST00000473405 CBWD2Q8IUF1 395 aa20.22■□□□□ 0.83
CCDC88B-206ENST00000473405 DCP1BQ8IZD4 617 aaKnown RBP20.22■□□□□ 0.83
CCDC88B-206ENST00000473405 CSGALNACT2Q8N6G5 542 aa20.22■□□□□ 0.83
CCDC88B-206ENST00000473405 KCNG4Q8TDN1 519 aa20.22■□□□□ 0.83
CCDC88B-206ENST00000473405 GIPC2Q8TF65 315 aa20.22■□□□□ 0.83
CCDC88B-206ENST00000473405 LEO1Q8WVC0 666 aaPredicted RBP20.22■□□□□ 0.83
CCDC88B-206ENST00000473405 PKMYT1Q99640 499 aa20.22■□□□□ 0.83
CCDC88B-206ENST00000473405 LRRC27Q9C0I9 530 aa20.22■□□□□ 0.83
CCDC88B-206ENST00000473405 GDAP2Q9NXN4 497 aa20.22■□□□□ 0.83
CCDC88B-206ENST00000473405 KIAA0391O15091 583 aaKnown RBP20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 EIF3DO15371 548 aaKnown RBP eCLIP20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 ZSCAN22P10073 491 aaPredicted RBP20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 HMGA1P17096 107 aaKnown RBP20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 WEE1P30291 646 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 ASIC1P78348 528 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 TSPY1Q01534 308 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 CSTF1Q05048 431 aaKnown RBP20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 EHHADHQ08426 723 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 PKP1Q13835 747 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 FOXD4L6Q3SYB3 417 aaPredicted RBP20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 ARHGAP15Q53QZ3 475 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 FOXD4L3Q6VB84 417 aaPredicted RBP20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 STXBP4Q6ZWJ1 553 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 OSTM1Q86WC4 334 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 TMEM86AQ8N2M4 240 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 IQUBQ8NA54 791 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 STKLD1Q8NE28 680 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 OR5B17Q8NGF7 314 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 FAM3CQ92520 227 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 NELL1Q92832 810 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 ACBD6Q9BR61 282 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 CHRDQ9H2X0 955 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 INTS13Q9NVM9 706 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 DDX43Q9NXZ2 648 aaKnown RBP20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 OBP2AQ9NY56 170 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 HSPBP1Q9NZL4 362 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 PCDHB5Q9Y5E4 795 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 ANAPC1Q9H1A4 1944 aa20.21■□□□□ 0.83
CCDC88B-206ENST00000473405 SLC38A8A6NNN8 435 aa20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 HCRTO43612 131 aa20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 HUS1O60921 280 aa20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 F13A1P00488 732 aa20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 KRT19P08727 400 aa20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 TMEM191BP0C7N4 346 aa20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 ACAT1P24752 427 aaKnown RBP20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms