RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 MMS19Q96T76 1030 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 CELF4Q9BZC1 486 aaKnown RBP5.75□□□□□ -1.49
HMGB1-207ENST00000468384 TGIF2Q9GZN2 237 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 FAM49AQ9H0Q0 323 aaPredicted RBP5.75□□□□□ -1.49
HMGB1-207ENST00000468384 BICC1Q9H694 974 aaKnown RBP5.75□□□□□ -1.49
HMGB1-207ENST00000468384 ASCL3Q9NQ33 180 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 THSD1Q9NS62 852 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 GTSE1Q9NYZ3 720 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 C9orf78Q9NZ63 289 aaPredicted RBP5.75□□□□□ -1.49
HMGB1-207ENST00000468384 TUBE1Q9UJT0 475 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 CCPG1Q9ULG6 757 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 MRVI1Q9Y6F6 885 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 PDCD11Q14690 1871 aaKnown RBP5.75□□□□□ -1.49
HMGB1-207ENST00000468384 AP5Z1O43299 807 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 GJB6O95452 261 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 EGFP01133 1207 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 SOD2P04179 222 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 RPLP2P05387 115 aaKnown RBP5.74□□□□□ -1.49
HMGB1-207ENST00000468384 C1SP09871 688 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 ARAFP10398 606 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 ZSCAN20P17040 1043 aaPredicted RBP5.74□□□□□ -1.49
HMGB1-207ENST00000468384 HOXA9P31269 272 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 NOS2P35228 1153 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 SLC11A1P49279 550 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 GABREP78334 506 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 ZNF33AQ06730 810 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 CLN3Q13286 438 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 ORC1Q13415 861 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 TEAD4Q15561 434 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 RTN1Q16799 776 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 C11orf91Q3C1V1 193 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 PPM1LQ5SGD2 360 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 CELF3Q5SZQ8 465 aaKnown RBP5.74□□□□□ -1.49
HMGB1-207ENST00000468384 EGFLAMQ63HQ2 1017 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 ALG1LQ6GMV1 187 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 RSRC2Q7L4I2 434 aaKnown RBP5.74□□□□□ -1.49
HMGB1-207ENST00000468384 TAS1R1Q7RTX1 841 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 FCHSD1Q86WN1 690 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 RPAP2Q8IXW5 612 aaPredicted RBP5.74□□□□□ -1.49
HMGB1-207ENST00000468384 ZNF295-AS1Q8N0V1 137 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 ANKRD44Q8N8A2 993 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 DCBLD1Q8N8Z6 715 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 C8orf58Q8NAV2 365 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 RNF169Q8NCN4 708 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 SMARCD2Q92925 531 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 DYNLL2Q96FJ2 89 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 SPATA32Q96LK8 384 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 ESYT1Q9BSJ8 1104 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 SSBP4Q9BWG4 385 aaPredicted RBP5.74□□□□□ -1.49
HMGB1-207ENST00000468384 ACBD3Q9H3P7 528 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 NRDE2Q9H7Z3 1164 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 KLK14Q9P0G3 267 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 FTSJ1Q9UET6 329 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 ERRFI1Q9UJM3 462 aaPredicted RBP5.74□□□□□ -1.49
HMGB1-207ENST00000468384 ST3GAL5Q9UNP4 418 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 CLCA2Q9UQC9 943 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 AKAP2Q9Y2D5 859 aa5.74□□□□□ -1.49
HMGB1-207ENST00000468384 NOC2LQ9Y3T9 749 aaKnown RBP5.74□□□□□ -1.49
HMGB1-207ENST00000468384 EPPK1P58107 5090 aaKnown RBP5.73□□□□□ -1.49
HMGB1-207ENST00000468384 MBLAC1A4D2B0 266 aaPredicted RBP5.73□□□□□ -1.49
HMGB1-207ENST00000468384 SERINC4A6NH21 518 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 TMEM232C9JQI7 657 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 PSPNO60542 156 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 RPS6KA5O75582 802 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 GGPS1O95749 300 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 CER1O95813 267 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 F11P03951 625 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 GNA15P30679 374 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 MATKP42679 507 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 RPS6P62753 249 aaKnown RBP5.73□□□□□ -1.49
HMGB1-207ENST00000468384 KCNAB2Q13303 367 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 MORC3Q14149 939 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 TTC39AQ5SRH9 613 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 GORABQ5T7V8 394 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 SYDE2Q5VT97 1194 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 TMEM198Q66K66 360 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 RNF207Q6ZRF8 634 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 YAF2Q8IY57 180 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 OSBP2Q969R2 916 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 SLITRK1Q96PX8 696 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 HERC2P3Q9BVR0 1158 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 FAM124BQ9H5Z6 455 aaPredicted RBP5.73□□□□□ -1.49
HMGB1-207ENST00000468384 CCSER2Q9H7U1 834 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 GPAMQ9HCL2 828 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 MCM9Q9NXL9 1143 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 DNAJB4Q9UDY4 337 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 ADGRE2Q9UHX3 823 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 FBXW11Q9UKB1 542 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 ZNF232Q9UNY5 417 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 RYR1P21817 5038 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 KDM3AQ9Y4C1 1321 aa5.73□□□□□ -1.49
HMGB1-207ENST00000468384 PKDREJQ9NTG1 2253 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 HEPACAM2A8MVW5 462 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 RTN2O75298 545 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 RHOP08100 348 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 POU2F2P09086 479 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 CYP2D6P10635 497 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 FGFR3P22607 806 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 TMPOP42166 694 aaKnown RBP5.72□□□□□ -1.49
HMGB1-207ENST00000468384 LSSP48449 732 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms