RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 KCNA2P16389 499 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 PFKLP17858 780 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 ADAM17P78536 824 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 EXOSC10Q01780 885 aaKnown RBP8.27□□□□□ -1.09
USP54-208ENST00000461520 MTMR1Q13613 665 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 KRT40Q6A162 431 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 APOA5Q6Q788 366 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 TMCO2Q7Z6W1 182 aaPredicted RBP8.27□□□□□ -1.09
USP54-208ENST00000461520 MICU3Q86XE3 530 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 SEPT1Q8WYJ6 367 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 SEPT8Q92599 483 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 LGR4Q9BXB1 951 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 LRRC2Q9BYS8 371 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 EPHX3Q9H6B9 360 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 JADE2Q9NQC1 790 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 SETD4Q9NVD3 440 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 PCDHA6Q9UN73 950 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 COG5Q9UP83 839 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 INSL6Q9Y581 213 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 PCDHA8Q9Y5H6 950 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 UBIAD1Q9Y5Z9 338 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 MYH7BA7E2Y1 1941 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 TRIP12Q14669 1992 aaPredicted RBP8.26□□□□□ -1.09
USP54-208ENST00000461520 TET1Q8NFU7 2136 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 NPHP3-ACAD11A0A0J9YXS1 232 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 hCG_1642624A0A1W2PR95 340 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 LCHNA4D1U4 455 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 LINC01553A4QN01 128 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 hCG_1984214I3L0E3 225 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 LPXNO60711 386 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 ATP9AO75110 1047 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 ATF2P15336 505 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 PAMP19021 973 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 TCF7P36402 384 aaPredicted RBP8.26□□□□□ -1.09
USP54-208ENST00000461520 RCAN1P53805 252 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 ERVK-21P61565 698 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 SP4Q02446 784 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 KRT32Q14532 448 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 UBE2SQ16763 222 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 UTP14CQ5TAP6 766 aaKnown RBP8.26□□□□□ -1.09
USP54-208ENST00000461520 TAF2Q6P1X5 1199 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.26□□□□□ -1.09
USP54-208ENST00000461520 HEATR3Q7Z4Q2 680 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 RPAINQ86UA6 219 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 RAB11FIP4Q86YS3 637 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 LZTR1Q8N653 840 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 ZNF713Q8N859 430 aaPredicted RBP8.26□□□□□ -1.09
USP54-208ENST00000461520 LMBR1Q8WVP7 490 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 APBB2Q92870 758 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 TGS1Q96RS0 853 aaKnown RBP8.26□□□□□ -1.09
USP54-208ENST00000461520 GPRC5CQ9NQ84 441 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 ERAP1Q9NZ08 941 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 EMC9Q9Y3B6 208 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 BRWD1Q9NSI6 2320 aa8.26□□□□□ -1.09
USP54-208ENST00000461520 BAZ2BQ9UIF8 2168 aaKnown RBP8.25□□□□□ -1.09
USP54-208ENST00000461520 GSTTP1A0A1W2PQM5 241 aa8.25□□□□□ -1.09
USP54-208ENST00000461520 ZBTB43O43298 467 aa8.25□□□□□ -1.09
USP54-208ENST00000461520 CDC45O75419 566 aa8.25□□□□□ -1.09
USP54-208ENST00000461520 FOSP01100 380 aaPredicted RBP8.25□□□□□ -1.09
USP54-208ENST00000461520 RPLP2P05387 115 aaKnown RBP8.25□□□□□ -1.09
USP54-208ENST00000461520 HMGB1P09429 215 aaKnown RBP8.25□□□□□ -1.09
USP54-208ENST00000461520 HTRA4P83105 476 aaPredicted RBP8.25□□□□□ -1.09
USP54-208ENST00000461520 TARBP2Q15633 366 aaKnown RBP8.25□□□□□ -1.09
USP54-208ENST00000461520 ADCK5Q3MIX3 580 aa8.25□□□□□ -1.09
USP54-208ENST00000461520 WWC2Q6AWC2 1192 aa8.25□□□□□ -1.09
USP54-208ENST00000461520 MYOCDQ8IZQ8 938 aa8.25□□□□□ -1.09
USP54-208ENST00000461520 SYT8Q8NBV8 401 aa8.25□□□□□ -1.09
USP54-208ENST00000461520 BVESQ8NE79 360 aa8.25□□□□□ -1.09
USP54-208ENST00000461520 FEZF2Q8TBJ5 459 aa8.25□□□□□ -1.09
USP54-208ENST00000461520 TNPO1Q92973 898 aaKnown RBP8.25□□□□□ -1.09
USP54-208ENST00000461520 TOP1MTQ969P6 601 aa8.25□□□□□ -1.09
USP54-208ENST00000461520 PPP1R14AQ96A00 147 aa8.25□□□□□ -1.09
USP54-208ENST00000461520 MXRA8Q9BRK3 442 aa8.25□□□□□ -1.09
USP54-208ENST00000461520 LRFN3Q9BTN0 628 aa8.25□□□□□ -1.09
USP54-208ENST00000461520 GLT8D2Q9H1C3 349 aa8.25□□□□□ -1.09
USP54-208ENST00000461520 SMARCAD1Q9H4L7 1026 aa8.25□□□□□ -1.09
USP54-208ENST00000461520 RIC8AQ9NPQ8 531 aa8.25□□□□□ -1.09
USP54-208ENST00000461520 CLEC1BQ9P126 229 aa8.25□□□□□ -1.09
USP54-208ENST00000461520 TELO2Q9Y4R8 837 aa8.25□□□□□ -1.09
USP54-208ENST00000461520 C7orf72A4D263 438 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 MBLAC1A4D2B0 266 aaPredicted RBP8.24□□□□□ -1.09
USP54-208ENST00000461520 OTOL1A6NHN0 477 aaPredicted RBP8.24□□□□□ -1.09
USP54-208ENST00000461520 GOLGA8AA7E2F4 631 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 GOLGA8BA8MQT2 603 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 B8ZZF3 427 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 SMAD7O15105 426 aaKnown RBP8.24□□□□□ -1.09
USP54-208ENST00000461520 ERCC5P28715 1186 aaPredicted RBP8.24□□□□□ -1.09
USP54-208ENST00000461520 MC3RP41968 323 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 NAPAP54920 295 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 SCRN1Q12765 414 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 PPFIA1Q13136 1202 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 RSPH3Q86UC2 560 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 TP53I13Q8NBR0 393 aaPredicted RBP8.24□□□□□ -1.09
USP54-208ENST00000461520 GDPD5Q8WTR4 605 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 GLG1Q92896 1179 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 TCEANC2Q96MN5 208 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 SAMD11Q96NU1 681 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 SDF4Q9BRK5 362 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 IFIH1Q9BYX4 1025 aaKnown RBP8.24□□□□□ -1.09
USP54-208ENST00000461520 XYLT2Q9H1B5 865 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms