RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ADAM30Q9UKF2 790 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 ATXN7L1Q9ULK2 861 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 APOBEC2Q9Y235 224 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 MEGF6O75095 1541 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 LOC105371267A0A1B0GV96 52 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 OR5K4A6NMS3 321 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 RSPH10B2B2RC85 870 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 DLL1O00548 723 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 DDX3YO15523 660 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 EFCAB14O75071 495 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 KRT14P02533 472 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 RSPH10BP0C881 870 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 DDX5P17844 614 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 NFKBIAP25963 317 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 NTF4P34130 210 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 SOX6P35712 828 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 ADCY8P40145 1251 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 CCT6AP40227 531 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 ECI1P42126 302 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 MAPK9P45984 424 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 TM4SF4P48230 202 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 AP3M2P53677 418 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 MRPS15P82914 257 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 IL1RL1Q01638 556 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 DSG1Q02413 1049 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 C19orf57Q0VDD7 668 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 PSMD6Q15008 389 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 CLUL1Q15846 466 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 CCDC57Q2TAC2 916 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 INAVAQ3KP66 663 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 CCDC153Q494R4 210 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 FBXO43Q4G163 708 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 SLC45A4Q5BKX6 768 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 ARHGAP11AQ6P4F7 1023 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 CWC27Q6UX04 472 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 TRIM59Q8IWR1 403 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 IGSF22Q8N9C0 903 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 ZNF565Q8N9K5 539 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 LMBR1Q8WVP7 490 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 CHFRQ96EP1 664 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 KLHDC7BQ96G42 594 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 SNF8Q96H20 258 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 RADILQ96JH8 1075 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 JAKMIP1Q96N16 626 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 MXD3Q9BW11 206 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 FAM129AQ9BZQ8 928 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 BHMT2Q9H2M3 363 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 NOL6Q9H6R4 1146 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 ACAD9Q9H845 621 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 ZWILCHQ9H900 591 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 PSTPIP2Q9H939 334 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 SCPEP1Q9HB40 452 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 SDHAF3Q9NRP4 125 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 HPF1Q9NWY4 346 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 MCM9Q9NXL9 1143 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 ZMYND8Q9ULU4 1186 aaPredicted RBP5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 SATB2Q9UPW6 733 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 EMC9Q9Y3B6 208 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 GOLGA6L9A6NEM1 432 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 WDR64B1ANS9 1081 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 UBXN8O00124 270 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 USO1O60763 962 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 SOCS5O75159 536 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 PPM1BO75688 479 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 OR5F1O95221 314 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 CNOT4O95628 575 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 DNTTP04053 509 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 PRKACBP22694 351 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 ECE1P42892 770 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 PLCD1P51178 756 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 ARFIP1P53367 373 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 GFRA1P56159 465 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 TUBA4AP68366 448 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 GUCY1A3Q02108 690 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 HSPA14Q0VDF9 509 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 FSTL1Q12841 308 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 INSCQ1MX18 579 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 LETM2Q2VYF4 491 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 PLA2G4EQ3MJ16 856 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 NDUFAF5Q5TEU4 345 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 ZNF468Q5VIY5 522 aaPredicted RBP5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 GTF2IRD2BQ6EKJ0 949 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 C1orf228Q6PIY5 440 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 GTF2IRD2Q86UP8 949 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 EPHX4Q8IUS5 362 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 CDAN1Q8IWY9 1227 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 NKAPQ8N5F7 415 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 USHBP1Q8N6Y0 703 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 PPM1NQ8N819 430 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 ANKRD53Q8N9V6 530 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 TOR1AIP2Q8NFQ8 470 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 CEP70Q8NHQ1 597 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 CHTF18Q8WVB6 975 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 AHCYL2Q96HN2 611 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 ARL5BQ96KC2 179 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 FAM20AQ96MK3 541 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 CMTM3Q96MX0 182 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 RIOK1Q9BRS2 568 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 WDR18Q9BV38 432 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 VPS11Q9H270 941 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms