RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 FGF19O95750 216 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 TNNC2P02585 160 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 HAPLN1P10915 354 aaPredicted RBP12.95□□□□□ -0.34
USP40-210ENST00000454354 ATF6P18850 670 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 TUFMP49411 452 aaKnown RBP12.95□□□□□ -0.34
USP40-210ENST00000454354 PRKCQQ04759 706 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 CYP24A1Q07973 514 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 BFSP1Q12934 665 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 PSMD6Q15008 389 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 TEAD2Q15562 447 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 MLF2Q15773 248 aaPredicted RBP12.95□□□□□ -0.34
USP40-210ENST00000454354 KNOP1Q1ED39 458 aaKnown RBP12.95□□□□□ -0.34
USP40-210ENST00000454354 DUOXA2Q1HG44 320 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 LMBRD2Q68DH5 695 aaPredicted RBP12.95□□□□□ -0.34
USP40-210ENST00000454354 HS2ST1Q7LGA3 356 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 ITIH5Q86UX2 942 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 NELFCDQ8IXH7 590 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 XXYLT1Q8NBI6 393 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 TMEM174Q8WUU8 243 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 DNASE1L2Q92874 299 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 SMARCD2Q92925 531 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 SHDQ96IW2 340 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 CHAMP1Q96JM3 812 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 ZSWIM3Q96MP5 696 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 PHOX2BQ99453 314 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 PKMYT1Q99640 499 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 ACBD6Q9BR61 282 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 PLA2G2FQ9BZM2 168 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 SCAND2PQ9GZW5 306 aaPredicted RBP12.95□□□□□ -0.34
USP40-210ENST00000454354 ZFP14Q9HCL3 533 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 DLGAP2Q9P1A6 1054 aa12.95□□□□□ -0.34
USP40-210ENST00000454354 FAM186AA6NE01 2351 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 A0A1W2PQ27 194 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 A0A1W2PQ64 194 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 A0A1W2PQD8 194 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 A0A1W2PRU2 124 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 GABRDO14764 452 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 CLIC2O15247 247 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 SOAT2O75908 522 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 KRT19P08727 400 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 GJA1P17302 382 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 MRE11P49959 708 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 CYP2J2P51589 502 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 MYL7Q01449 175 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 TSPY1Q01534 308 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 MYO1EQ12965 1108 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 STK4Q13043 487 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 PSMD2Q13200 908 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 NFE2Q16621 373 aaPredicted RBP12.94□□□□□ -0.34
USP40-210ENST00000454354 SOWAHAQ2M3V2 549 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 INTS6LQ5JSJ4 861 aaKnown RBP12.94□□□□□ -0.34
USP40-210ENST00000454354 GAREM2Q75VX8 874 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 DPH6Q7L8W6 267 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 DNAJB7Q7Z6W7 309 aaPredicted RBP12.94□□□□□ -0.34
USP40-210ENST00000454354 ALYREFQ86V81 257 aaKnown RBP12.94□□□□□ -0.34
USP40-210ENST00000454354 OSTM1Q86WC4 334 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 DTWD2Q8NBA8 298 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 KIAA0895Q8NCT3 520 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 PJA1Q8NG27 643 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 GOLGA5Q8TBA6 731 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 ZSCAN18Q8TBC5 510 aaPredicted RBP12.94□□□□□ -0.34
USP40-210ENST00000454354 DEPDC1BQ8WUY9 529 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 CGRRF1Q99675 332 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 SEPT5Q99719 369 aaPredicted RBP12.94□□□□□ -0.34
USP40-210ENST00000454354 MKNK1Q9BUB5 465 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 GZF1Q9H116 711 aaPredicted RBP12.94□□□□□ -0.34
USP40-210ENST00000454354 ZNF334Q9HCZ1 680 aaPredicted RBP12.94□□□□□ -0.34
USP40-210ENST00000454354 ABCB6Q9NP58 842 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 TMLHEQ9NVH6 421 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 DDX43Q9NXZ2 648 aaKnown RBP12.94□□□□□ -0.34
USP40-210ENST00000454354 PCDHB5Q9Y5E4 795 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 SNX9Q9Y5X1 595 aa12.94□□□□□ -0.34
USP40-210ENST00000454354 NCANO14594 1321 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 MYH10P35580 1976 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.93□□□□□ -0.34
USP40-210ENST00000454354 KANSL1LA0AUZ9 987 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 H0Y858 1186 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 PRPF40AO75400 957 aaKnown RBP12.93□□□□□ -0.34
USP40-210ENST00000454354 RFX1P22670 979 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 WEE1P30291 646 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 LHX1P48742 406 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 SNW1Q13573 536 aaKnown RBP12.93□□□□□ -0.34
USP40-210ENST00000454354 VEPH1Q14D04 833 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 MGAT5BQ3V5L5 792 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 KMT5BQ4FZB7 885 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 SLC44A4Q53GD3 710 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 VITQ6UXI7 678 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 TRAPPC11Q7Z392 1133 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 SLC9A9Q8IVB4 645 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 ADGRF2Q8IZF7 708 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 KBTBD7Q8WVZ9 684 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 ATOH1Q92858 354 aaPredicted RBP12.93□□□□□ -0.34
USP40-210ENST00000454354 E2F7Q96AV8 911 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 HPDLQ96IR7 371 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 LPIN3Q9BQK8 851 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 OSBPL6Q9BZF3 934 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 FOXQ1Q9C009 403 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 IL21Q9HBE4 155 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 TRPV5Q9NQA5 729 aa12.93□□□□□ -0.34
USP40-210ENST00000454354 EXOC1Q9NV70 894 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms