RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 HASPINQ8TF76 798 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 CYTH2Q99418 400 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 PPARGC1AQ9UBK2 798 aaKnown RBP12.89□□□□□ -0.35
TCOF1-205ENST00000439160 COL14A1Q05707 1796 aaKnown RBP12.89□□□□□ -0.35
TCOF1-205ENST00000439160 EEF2KO00418 725 aaKnown RBP12.89□□□□□ -0.35
TCOF1-205ENST00000439160 PPIL2Q13356 520 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 TRIM68Q6AZZ1 485 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 ZPBP2Q6X784 338 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 WDR75Q8IWA0 830 aaKnown RBP12.89□□□□□ -0.35
TCOF1-205ENST00000439160 C4orf33Q8N1A6 199 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 CCDC33Q8N5R6 958 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 TLR10Q9BXR5 811 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 FGFBP2Q9BYJ0 223 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 PORCNQ9H237 461 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 VTA1Q9NP79 307 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 ABCF3Q9NUQ8 709 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 ABI2Q9NYB9 513 aaPredicted RBP12.89□□□□□ -0.35
TCOF1-205ENST00000439160 ZC3H7BQ9UGR2 993 aaKnown RBP12.89□□□□□ -0.35
TCOF1-205ENST00000439160 MID2Q9UJV3 735 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 MAPK13O15264 365 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 PPP1R37O75864 691 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 RPSAP08865 295 aaKnown RBP12.89□□□□□ -0.35
TCOF1-205ENST00000439160 ESRRAP11474 423 aaPredicted RBP12.89□□□□□ -0.35
TCOF1-205ENST00000439160 PRAMEP78395 509 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 RBBP5Q15291 538 aaKnown RBP12.89□□□□□ -0.35
TCOF1-205ENST00000439160 BOLA3Q53S33 107 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 TREML2Q5T2D2 321 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 FAXCQ5TGI0 409 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 JADE1Q6IE81 842 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 KLC3Q6P597 504 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 TRMT10CQ7L0Y3 403 aaKnown RBP12.89□□□□□ -0.35
TCOF1-205ENST00000439160 ABRAQ8N0Z2 381 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 NLGN2Q8NFZ4 835 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 PABPC5Q96DU9 382 aaKnown RBP12.89□□□□□ -0.35
TCOF1-205ENST00000439160 L3MBTL3Q96JM7 780 aaPredicted RBP12.89□□□□□ -0.35
TCOF1-205ENST00000439160 ZNF512Q96ME7 567 aaPredicted RBP12.89□□□□□ -0.35
TCOF1-205ENST00000439160 BCAP29Q9UHQ4 241 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 ADAMTS3O15072 1205 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 ACVR2BQ13705 512 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 NPY5RQ15761 445 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 PHLDB3Q6NSJ2 640 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 TLK2Q86UE8 772 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 CD302Q8IX05 232 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 CCNYL1Q8N7R7 359 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 TMEM161BQ8NDZ6 487 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 CHMP6Q96FZ7 201 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 TRABDQ9H4I3 376 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 GPATCH2LQ9NWQ4 482 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 AP1G2O75843 785 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 LGALS2P05162 132 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 GLRA2P23416 452 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 STX1BP61266 288 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 KCNMA1Q12791 1236 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 ZNF235Q14590 738 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 SH2D4BQ5SQS7 431 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 DDIT4Q9NX09 232 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 VAV3Q9UKW4 847 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 FAM208AQ9UK61 1670 aaKnown RBP12.88□□□□□ -0.35
TCOF1-205ENST00000439160 M0QYT0 321 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 CYB561D2O14569 222 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 CLGNO14967 610 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 CALCAP01258 141 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 MAGEA4P43358 317 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 RECQLP46063 649 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-205ENST00000439160 CLEC16AQ2KHT3 1053 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 TADA2BQ86TJ2 420 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 IRF2BP1Q8IU81 584 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 BRSK2Q8IWQ3 736 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 TMEM176AQ96HP8 235 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 FAM84AQ96KN4 292 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 KLF6Q99612 283 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-205ENST00000439160 ZSCAN5CA6NGD5 496 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-205ENST00000439160 H2AFXP16104 143 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-205ENST00000439160 GCNT1Q02742 428 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 ANO5Q75V66 913 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 NOP9Q86U38 636 aaKnown RBP12.88□□□□□ -0.35
TCOF1-205ENST00000439160 HNRNPLLQ8WVV9 542 aaKnown RBP12.88□□□□□ -0.35
TCOF1-205ENST00000439160 FUT8Q9BYC5 575 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 TIMM13Q9Y5L4 95 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-205ENST00000439160 ZNF541Q9H0D2 1346 aa12.88□□□□□ -0.35
TCOF1-205ENST00000439160 GPR182O15218 404 aa12.87□□□□□ -0.35
TCOF1-205ENST00000439160 PROSCO94903 275 aa12.87□□□□□ -0.35
TCOF1-205ENST00000439160 ADRB2P07550 413 aa12.87□□□□□ -0.35
TCOF1-205ENST00000439160 PAPOLAP51003 745 aaKnown RBP12.87□□□□□ -0.35
TCOF1-205ENST00000439160 BEX3Q00994 111 aa12.87□□□□□ -0.35
TCOF1-205ENST00000439160 PRAMEF19Q5SWL8 479 aa12.87□□□□□ -0.35
TCOF1-205ENST00000439160 WDR59Q6PJI9 974 aa12.87□□□□□ -0.35
TCOF1-205ENST00000439160 TRIM67Q6ZTA4 783 aa12.87□□□□□ -0.35
TCOF1-205ENST00000439160 C3orf62Q6ZUJ4 267 aa12.87□□□□□ -0.35
TCOF1-205ENST00000439160 RNF135Q8IUD6 432 aa12.87□□□□□ -0.35
TCOF1-205ENST00000439160 FBXO25Q8TCJ0 367 aa12.87□□□□□ -0.35
TCOF1-205ENST00000439160 VCXQ9H320 206 aa12.87□□□□□ -0.35
TCOF1-205ENST00000439160 TXLNGQ9NUQ3 528 aa12.87□□□□□ -0.35
TCOF1-205ENST00000439160 PRDM4Q9UKN5 801 aa12.87□□□□□ -0.35
TCOF1-205ENST00000439160 GLI1P08151 1106 aa12.87□□□□□ -0.35
TCOF1-205ENST00000439160 MX2P20592 715 aa12.87□□□□□ -0.35
TCOF1-205ENST00000439160 EPHB2P29323 1055 aa12.87□□□□□ -0.35
TCOF1-205ENST00000439160 PTGER2P43116 358 aa12.87□□□□□ -0.35
TCOF1-205ENST00000439160 GTF2BQ00403 316 aa12.87□□□□□ -0.35
TCOF1-205ENST00000439160 SNCBQ16143 134 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms