RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 PCDHB5Q9Y5E4 795 aa16.3■□□□□ 0.2
LIMS3-201ENST00000437679 ZDBF2Q9HCK1 2354 aa16.3■□□□□ 0.2
LIMS3-201ENST00000437679 LRRIQ3A6PVS8 624 aaPredicted RBP16.29■□□□□ 0.2
LIMS3-201ENST00000437679 MAPK13O15264 365 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 MICAL2O94851 1124 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 CLSTN1O94985 981 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 MYL4P12829 197 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 CEBPBP17676 345 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 ACAT1P24752 427 aaKnown RBP16.29■□□□□ 0.2
LIMS3-201ENST00000437679 ATICP31939 592 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 TNNC1P63316 161 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 CLDN10P78369 228 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 VEPH1Q14D04 833 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 INTS6LQ5JSJ4 861 aaKnown RBP16.29■□□□□ 0.2
LIMS3-201ENST00000437679 PRSS36Q5K4E3 855 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 ZNF658Q5TYW1 1059 aaPredicted RBP16.29■□□□□ 0.2
LIMS3-201ENST00000437679 ITIH5Q86UX2 942 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 OSTM1Q86WC4 334 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 SUGP1Q8IWZ8 645 aaKnown RBP16.29■□□□□ 0.2
LIMS3-201ENST00000437679 ELOA2Q8IYF1 753 aaPredicted RBP16.29■□□□□ 0.2
LIMS3-201ENST00000437679 SMYD4Q8IYR2 804 aaPredicted RBP16.29■□□□□ 0.2
LIMS3-201ENST00000437679 HS6ST3Q8IZP7 471 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 SLC44A3Q8N4M1 653 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 TTC9BQ8N6N2 239 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 FAM200AQ8TCP9 573 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 PLEKHO2Q8TD55 490 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 TMC2Q8TDI7 906 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 MCRS1Q96EZ8 462 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 PCDHA5Q9Y5H7 936 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 NUMBLQ9Y6R0 609 aa16.29■□□□□ 0.2
LIMS3-201ENST00000437679 GABRDO14764 452 aa16.28■□□□□ 0.2
LIMS3-201ENST00000437679 GADD45BO75293 160 aaPredicted RBP16.28■□□□□ 0.2
LIMS3-201ENST00000437679 SOAT2O75908 522 aa16.28■□□□□ 0.2
LIMS3-201ENST00000437679 STAU1O95793 577 aaKnown RBP16.28■□□□□ 0.2
LIMS3-201ENST00000437679 HAPLN1P10915 354 aaPredicted RBP16.28■□□□□ 0.2
LIMS3-201ENST00000437679 KRT13P13646 458 aa16.28■□□□□ 0.2
LIMS3-201ENST00000437679 WARSP23381 471 aaKnown RBP16.28■□□□□ 0.2
LIMS3-201ENST00000437679 CDR1P51861 262 aa16.28■□□□□ 0.2
LIMS3-201ENST00000437679 EPHA5P54756 1037 aa16.28■□□□□ 0.2
LIMS3-201ENST00000437679 MYL6P60660 151 aa16.28■□□□□ 0.2
LIMS3-201ENST00000437679 ADAM9Q13443 819 aa16.28■□□□□ 0.2
LIMS3-201ENST00000437679 TAF12Q16514 161 aa16.28■□□□□ 0.2
LIMS3-201ENST00000437679 WDR72Q3MJ13 1102 aa16.28■□□□□ 0.2
LIMS3-201ENST00000437679 PARM1Q6UWI2 310 aa16.28■□□□□ 0.2
LIMS3-201ENST00000437679 LIMS2Q7Z4I7 341 aa16.28■□□□□ 0.2
LIMS3-201ENST00000437679 DNAJB7Q7Z6W7 309 aaPredicted RBP16.28■□□□□ 0.2
LIMS3-201ENST00000437679 FBXL6Q8N531 539 aa16.28■□□□□ 0.2
LIMS3-201ENST00000437679 SPATA20Q8TB22 786 aa16.28■□□□□ 0.2
LIMS3-201ENST00000437679 FGF14Q92915 247 aa16.28■□□□□ 0.2
LIMS3-201ENST00000437679 TCEAL4Q96EI5 215 aa16.28■□□□□ 0.2
LIMS3-201ENST00000437679 DNAJC25Q9H1X3 360 aa16.28■□□□□ 0.2
LIMS3-201ENST00000437679 FBXL21Q9UKT6 434 aa16.28■□□□□ 0.2
LIMS3-201ENST00000437679 IKBKBO14920 756 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 NARSO43776 548 aaKnown RBP16.27■□□□□ 0.2
LIMS3-201ENST00000437679 AKAP3O75969 853 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 FGF19O95750 216 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 C4BPAP04003 597 aaKnown RBP16.27■□□□□ 0.2
LIMS3-201ENST00000437679 FAM163BP0C2L3 166 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 PSMC2P35998 433 aaKnown RBP16.27■□□□□ 0.2
LIMS3-201ENST00000437679 CCR2P41597 374 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 PRCPP42785 496 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 VAMP7P51809 220 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 DLG4P78352 724 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 NCOA4Q13772 614 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 EDRF1Q3B7T1 1238 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 ZCWPW2Q504Y3 356 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 COBLL1Q53SF7 1204 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 TDRD10Q5VZ19 366 aaKnown RBP16.27■□□□□ 0.2
LIMS3-201ENST00000437679 INTS8Q75QN2 995 aaKnown RBP16.27■□□□□ 0.2
LIMS3-201ENST00000437679 FAM186BQ8IYM0 893 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 ST13P5Q8NFI4 369 aaPredicted RBP16.27■□□□□ 0.2
LIMS3-201ENST00000437679 KBTBD7Q8WVZ9 684 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 ERCC4Q92889 916 aaPredicted RBP16.27■□□□□ 0.2
LIMS3-201ENST00000437679 PSMG2Q969U7 264 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 TSG101Q99816 390 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 PI4K2AQ9BTU6 479 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 SNX25Q9H3E2 840 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 ABCB6Q9NP58 842 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 TMLHEQ9NVH6 421 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 NXF1Q9UBU9 619 aaKnown RBP16.27■□□□□ 0.2
LIMS3-201ENST00000437679 CDH9Q9ULB4 789 aa16.27■□□□□ 0.2
LIMS3-201ENST00000437679 CETN3O15182 167 aa16.26■□□□□ 0.19
LIMS3-201ENST00000437679 TACC1O75410 805 aa16.26■□□□□ 0.19
LIMS3-201ENST00000437679 SRFP11831 508 aa16.26■□□□□ 0.19
LIMS3-201ENST00000437679 GNL1P36915 607 aaPredicted RBP16.26■□□□□ 0.19
LIMS3-201ENST00000437679 STIM1Q13586 685 aa16.26■□□□□ 0.19
LIMS3-201ENST00000437679 ZNF699Q32M78 642 aa16.26■□□□□ 0.19
LIMS3-201ENST00000437679 TMC8Q8IU68 726 aa16.26■□□□□ 0.19
LIMS3-201ENST00000437679 SPATA2LQ8IUW3 424 aaPredicted RBP16.26■□□□□ 0.19
LIMS3-201ENST00000437679 LPIN3Q9BQK8 851 aa16.26■□□□□ 0.19
LIMS3-201ENST00000437679 SYT15Q9BQS2 421 aa16.26■□□□□ 0.19
LIMS3-201ENST00000437679 RPP25Q9BUL9 199 aaKnown RBP16.26■□□□□ 0.19
LIMS3-201ENST00000437679 LRRC3Q9BY71 257 aa16.26■□□□□ 0.19
LIMS3-201ENST00000437679 GPR88Q9GZN0 384 aa16.26■□□□□ 0.19
LIMS3-201ENST00000437679 XYLT2Q9H1B5 865 aa16.26■□□□□ 0.19
LIMS3-201ENST00000437679 MFSD1Q9H3U5 465 aa16.26■□□□□ 0.19
LIMS3-201ENST00000437679 VRTNQ9H8Y1 702 aa16.26■□□□□ 0.19
LIMS3-201ENST00000437679 GTF3C4Q9UKN8 822 aa16.26■□□□□ 0.19
LIMS3-201ENST00000437679 ZNF318Q5VUA4 2279 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 A0A1W2PRU2 124 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms