RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 SH2D3CQ8N5H7 860 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 BLOC1S5Q8TDH9 187 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 DIS3LQ8TF46 1054 aaKnown RBP16.06■□□□□ 0.16
PTPRF-206ENST00000429895 TNS3Q68CZ2 1445 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 ARHGAP31Q2M1Z3 1444 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 MYO1CO00159 1063 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 CDH2P19022 906 aaPredicted RBP16.05■□□□□ 0.16
PTPRF-206ENST00000429895 SERPINB9P50453 376 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 CDC16Q13042 620 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 DDX39BQ13838 428 aaKnown RBP16.05■□□□□ 0.16
PTPRF-206ENST00000429895 CALML6Q8TD86 181 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 TP53BP2Q13625 1128 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 MTFR1Q15390 333 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 FUT11Q495W5 492 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 CARNMT1Q8N4J0 409 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.05■□□□□ 0.16
PTPRF-206ENST00000429895 HBP1O60381 514 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 CST8O60676 142 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 ODC1P11926 461 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 ALOX15P16050 662 aaPredicted RBP16.05■□□□□ 0.16
PTPRF-206ENST00000429895 NPEPPSP55786 919 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 KCNK10P57789 538 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 ZNF177Q13360 481 aaPredicted RBP16.05■□□□□ 0.16
PTPRF-206ENST00000429895 HIST2H2ACQ16777 129 aaPredicted RBP16.05■□□□□ 0.16
PTPRF-206ENST00000429895 HIST2H2AA3Q6FI13 130 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 LINC00116Q8NCU8 138 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 NYAP2Q9P242 653 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 SNX12Q9UMY4 172 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 MBL2P11226 248 aaPredicted RBP16.05■□□□□ 0.16
PTPRF-206ENST00000429895 COMTP21964 271 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 EFHC1Q5JVL4 640 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 C1orf131Q8NDD1 294 aaKnown RBP16.05■□□□□ 0.16
PTPRF-206ENST00000429895 IRX2Q9BZI1 471 aaPredicted RBP16.05■□□□□ 0.16
PTPRF-206ENST00000429895 DPP3Q9NY33 737 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 ITIH6Q6UXX5 1313 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 PITPNM2Q9BZ72 1349 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 CRB1P82279 1406 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 NDUFB5O43674 189 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 FAM107AO95990 144 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 TAF6P49848 677 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 TTC39BQ5VTQ0 682 aaPredicted RBP16.05■□□□□ 0.16
PTPRF-206ENST00000429895 C16orf89Q6UX73 402 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 ZNF669Q96BR6 464 aaPredicted RBP16.05■□□□□ 0.16
PTPRF-206ENST00000429895 C7orf25Q9BPX7 421 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 PRMT7Q9NVM4 692 aaPredicted RBP16.05■□□□□ 0.16
PTPRF-206ENST00000429895 PAK5Q9P286 719 aa16.05■□□□□ 0.16
PTPRF-206ENST00000429895 PDHBP11177 359 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 SERPINB10P48595 397 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 MRPS15P82914 257 aaKnown RBP16.04■□□□□ 0.16
PTPRF-206ENST00000429895 MROH9Q5TGP6 573 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 LVRNQ6Q4G3 990 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 CATSPER1Q8NEC5 780 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 ZKSCAN4Q969J2 545 aaPredicted RBP16.04■□□□□ 0.16
PTPRF-206ENST00000429895 EME1Q96AY2 570 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 TARS2Q9BW92 718 aaKnown RBP16.04■□□□□ 0.16
PTPRF-206ENST00000429895 RANBP17Q9H2T7 1088 aaKnown RBP16.04■□□□□ 0.16
PTPRF-206ENST00000429895 SMG5Q9UPR3 1016 aaKnown RBP16.04■□□□□ 0.16
PTPRF-206ENST00000429895 ZBTB39O15060 712 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 LZTS3O60299 673 aaPredicted RBP16.04■□□□□ 0.16
PTPRF-206ENST00000429895 ENTPD3O75355 529 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 ASS1P00966 412 aaKnown RBP16.04■□□□□ 0.16
PTPRF-206ENST00000429895 DPEP1P16444 411 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 ITIH2P19823 946 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 DPYDQ12882 1025 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 FAXCQ5TGI0 409 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 LRRC8BQ6P9F7 803 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 DEFB129Q9H1M3 183 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 ARHGEF5Q12774 1597 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 KDM1AO60341 852 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 WBP4O75554 376 aaKnown RBP16.04■□□□□ 0.16
PTPRF-206ENST00000429895 SERPINI2O75830 405 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 DARSP14868 501 aaKnown RBP16.04■□□□□ 0.16
PTPRF-206ENST00000429895 EPHB2P29323 1055 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 TERF2Q15554 542 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 IYDQ6PHW0 289 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 ATP6V0D2Q8N8Y2 350 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 HASPINQ8TF76 798 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 GLT1D1Q96MS3 346 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 TMEM8AQ9HCN3 771 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 M0QYT0 321 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 H2AFYO75367 372 aaKnown RBP16.04■□□□□ 0.16
PTPRF-206ENST00000429895 PTGER2P43116 358 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 VSNL1P62760 191 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 ZNF614Q8N883 585 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 VPS50Q96JG6 964 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 OLFM3Q96PB7 478 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 THTPAQ9BU02 230 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 WDCPQ9H6R7 721 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.04■□□□□ 0.166e-6■□□□□ 10.5
PTPRF-206ENST00000429895 ARL2BPQ9Y2Y0 163 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 ZNF711Q9Y462 761 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 RFX7Q2KHR2 1363 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 UBE2Q2LH0YL09 131 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 AGTP01019 485 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 RINLQ6ZS11 566 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 C16orf86Q6ZW13 317 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 SLC44A2Q8IWA5 706 aaPredicted RBP16.04■□□□□ 0.16
PTPRF-206ENST00000429895 MIER2Q8N344 545 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 RPRD1AQ96P16 312 aaPredicted RBP16.04■□□□□ 0.16
PTPRF-206ENST00000429895 OSBPL8Q9BZF1 889 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms