RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 CCDC43Q96MW1 224 aaKnown RBP9.4□□□□□ -0.9
HDAC1-202ENST00000428704 NACC1Q96RE7 527 aa9.4□□□□□ -0.9
HDAC1-202ENST00000428704 BAG1Q99933 345 aaPredicted RBP9.4□□□□□ -0.9
HDAC1-202ENST00000428704 LSM14BQ9BX40 385 aaKnown RBP9.4□□□□□ -0.9
HDAC1-202ENST00000428704 NFKBIZQ9BYH8 718 aa9.4□□□□□ -0.9
HDAC1-202ENST00000428704 EXOC1Q9NV70 894 aa9.4□□□□□ -0.9
HDAC1-202ENST00000428704 STK39Q9UEW8 545 aa9.4□□□□□ -0.9
HDAC1-202ENST00000428704 ZFP37Q9Y6Q3 630 aaPredicted RBP9.4□□□□□ -0.9
HDAC1-202ENST00000428704 COL4A3Q01955 1670 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 MYMKA6NI61 221 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 KCNJ18B7U540 433 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 E9PMD0 336 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 TEX33O43247 280 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 B4GALT5O43286 388 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 ZSCAN12O43309 604 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 CTIFO43310 598 aaKnown RBP9.39□□□□□ -0.91
HDAC1-202ENST00000428704 LILRB3O75022 631 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 S1PR4O95977 384 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 EDN1P05305 212 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 URODP06132 367 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 GALTP07902 379 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 CYP11B2P19099 503 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 FSHRP23945 695 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 CNR2P34972 360 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 RAB27AP51159 221 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 AFF1P51825 1210 aaKnown RBP9.39□□□□□ -0.91
HDAC1-202ENST00000428704 RNASELQ05823 741 aaKnown RBP9.39□□□□□ -0.91
HDAC1-202ENST00000428704 STK4Q13043 487 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 TFDP1Q14186 410 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 KCNJ12Q14500 433 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 KRT31Q15323 416 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 CCDC6Q16204 474 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 QPCTQ16769 361 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 CEP135Q66GS9 1140 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 MRPL10Q7Z7H8 261 aaKnown RBP9.39□□□□□ -0.91
HDAC1-202ENST00000428704 CNGA4Q8IV77 575 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 FAM114A1Q8IWE2 563 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 SMG8Q8ND04 991 aaKnown RBP9.39□□□□□ -0.91
HDAC1-202ENST00000428704 MCPH1Q8NEM0 835 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 ZNF507Q8TCN5 953 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 IQCDQ96DY2 449 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 CPB2Q96IY4 423 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 PCMTD1Q96MG8 357 aaPredicted RBP9.39□□□□□ -0.91
HDAC1-202ENST00000428704 DUSP9Q99956 384 aaKnown RBP9.39□□□□□ -0.91
HDAC1-202ENST00000428704 VN1R3Q9BXE9 311 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 EIF2AQ9BY44 585 aaKnown RBP9.39□□□□□ -0.91
HDAC1-202ENST00000428704 GBP3Q9H0R5 595 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 BHMT2Q9H2M3 363 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 RXFP3Q9NSD7 469 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 NDRG2Q9UN36 371 aaKnown RBP9.39□□□□□ -0.91
HDAC1-202ENST00000428704 KIAA1024Q9UPX6 916 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 PCDHB2Q9Y5E7 798 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 WDFY3Q8IZQ1 3526 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 PATJQ8NI35 1801 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 BPTFQ12830 3046 aa9.39□□□□□ -0.91
HDAC1-202ENST00000428704 LOC400499M0QZD8 3231 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 ARHGEF35A5YM69 484 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 LRRIQ4A6NIV6 560 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 USP27XA6NNY8 438 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 CHURC1-FNTBB4DL54 471 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 INO80B-WBP1J3KQ70 363 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 N4BP3O15049 544 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 AXIN1O15169 862 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 ERLIN2O94905 339 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 FGFR1OPO95684 399 aaKnown RBP9.38□□□□□ -0.91
HDAC1-202ENST00000428704 TOP3BO95985 862 aaKnown RBP9.38□□□□□ -0.91
HDAC1-202ENST00000428704 ARF4P18085 180 aaPredicted RBP9.38□□□□□ -0.91
HDAC1-202ENST00000428704 SLC11A1P49279 550 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 FNTBP49356 437 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 PMS1P54277 932 aaKnown RBP9.38□□□□□ -0.91
HDAC1-202ENST00000428704 ASIC1P78348 528 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 LRRC63Q05C16 580 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 MAPK7Q13164 816 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 MCM6Q14566 821 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 PCBP1Q15365 356 aaKnown RBP eCLIP9.38□□□□□ -0.91
HDAC1-202ENST00000428704 FIGNQ5HY92 759 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 PDZD3Q86UT5 571 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 CDR2LQ86X02 465 aaPredicted RBP9.38□□□□□ -0.91
HDAC1-202ENST00000428704 REXO1L1PQ8IX06 675 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 DAW1Q8N136 415 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 KIF18AQ8NI77 898 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 RSPH1Q8WYR4 309 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 DNAJC19Q96DA6 116 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 PPP1R13BQ96KQ4 1090 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 C16orf45Q96MC5 204 aaPredicted RBP9.38□□□□□ -0.91
HDAC1-202ENST00000428704 PLIN2Q99541 437 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 IER2Q9BTL4 223 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 RUSC1Q9BVN2 902 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 SCNM1Q9BWG6 230 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 SRRTQ9BXP5 876 aaKnown RBP9.38□□□□□ -0.91
HDAC1-202ENST00000428704 CCDC113Q9H0I3 377 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 ARRDC1-AS1Q9H2J1 176 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 CHRDQ9H2X0 955 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 NXF3Q9H4D5 531 aaKnown RBP9.38□□□□□ -0.91
HDAC1-202ENST00000428704 NRDE2Q9H7Z3 1164 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 POLD4Q9HCU8 107 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 TBC1D13Q9NVG8 400 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 ZDHHC7Q9NXF8 308 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 CDH7Q9ULB5 785 aa9.38□□□□□ -0.91
HDAC1-202ENST00000428704 WASF3Q9UPY6 502 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms