RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 OTOAQ7RTW8 1153 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.11□□□□□ -0.95
USP40-203ENST00000427112 ASAP3Q8TDY4 903 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 MCUR1Q96AQ8 359 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 CDK5RAP2Q96SN8 1893 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 H7C0C1 242 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 INO80B-WBP1J3KQ70 363 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 CYP1A2P05177 515 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 ABL2P42684 1182 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 ATP5OP48047 213 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 ALDH18A1P54886 795 aaKnown RBP9.11□□□□□ -0.95
USP40-203ENST00000427112 CAPRIN2Q6IMN6 1127 aaKnown RBP9.11□□□□□ -0.95
USP40-203ENST00000427112 CES3Q6UWW8 571 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 NLRP9Q7RTR0 991 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 KRT27Q7Z3Y8 459 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 IGDCC3Q8IVU1 814 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 UNC45BQ8IWX7 931 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 TMEM192Q8IY95 271 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 FAM13CQ8NE31 585 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 GMCL1P1Q8NEA9 526 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 RILPQ96NA2 401 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 RPS6KC1Q96S38 1066 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 INO80BQ9C086 356 aaPredicted RBP9.11□□□□□ -0.95
USP40-203ENST00000427112 ARL8BQ9NVJ2 186 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 SEL1LQ9UBV2 794 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 IKBKGQ9Y6K9 419 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 ZNF536O15090 1300 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 MYPNQ86TC9 1320 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 hCG_2014768A0A024R1R8 64 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 FSCN2O14926 492 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 PAEPP09466 180 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 RABGGTBP53611 331 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 NCOA4Q13772 614 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 KPNB1Q14974 876 aaKnown RBP9.1□□□□□ -0.95
USP40-203ENST00000427112 RCN1Q15293 331 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 C15orf59Q2T9L4 293 aaPredicted RBP9.1□□□□□ -0.95
USP40-203ENST00000427112 KHDC1Q4VXA5 237 aaKnown RBP9.1□□□□□ -0.95
USP40-203ENST00000427112 NBPF12Q5TAG4 269 aaPredicted RBP9.1□□□□□ -0.95
USP40-203ENST00000427112 C16orf46Q6P387 395 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 C15orf52Q6ZUT6 534 aaKnown RBP9.1□□□□□ -0.95
USP40-203ENST00000427112 RSPH3Q86UC2 560 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 RHOT1Q8IXI2 618 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 NLGN1Q8N2Q7 840 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 ZNF606Q8WXB4 792 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 TFAP2BQ92481 460 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 PDCD2LQ9BRP1 358 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 XPNPEP1Q9NQW7 623 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 DLGAP2Q9P1A6 1054 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 WASF2Q9Y6W5 498 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 PLIN4Q96Q06 1357 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 COL22A1Q8NFW1 1626 aaPredicted RBP9.1□□□□□ -0.95
USP40-203ENST00000427112 CCDC160A6NGH7 325 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 WDR64B1ANS9 1081 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 SORBS2O94875 1100 aaKnown RBP9.1□□□□□ -0.95
USP40-203ENST00000427112 VNN1O95497 513 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 PYGBP11216 843 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 EPHB1P54762 984 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 BNIP1Q12981 228 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 TRPC3Q13507 836 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 LACTB2Q53H82 288 aaPredicted RBP9.1□□□□□ -0.95
USP40-203ENST00000427112 RNF220Q5VTB9 566 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 FAM219BQ5XKK7 198 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 TRMT10CQ7L0Y3 403 aaKnown RBP9.1□□□□□ -0.95
USP40-203ENST00000427112 TAS1R3Q7RTX0 852 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 POLNQ7Z5Q5 900 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 CCDC125Q86Z20 511 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 ANKRD35Q8N283 1001 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 CNKSR2Q8WXI2 1034 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 CLEC4DQ8WXI8 215 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 FAM161BQ96MY7 647 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 IDI2Q9BXS1 227 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 MIS12Q9H081 205 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 DENND2DQ9H6A0 471 aaPredicted RBP9.1□□□□□ -0.95
USP40-203ENST00000427112 YY1AP1Q9H869 796 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 NGRNQ9NPE2 291 aaKnown RBP9.1□□□□□ -0.95
USP40-203ENST00000427112 CITO14578 2027 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 LOC100653049A0A140TA62 436 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 B4GALT5O43286 388 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 KRT34O76011 436 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 PROSCO94903 275 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 ITGBL1O95965 494 aaPredicted RBP9.1□□□□□ -0.95
USP40-203ENST00000427112 RFC5P40937 340 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 SP2Q02086 613 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 WDR72Q3MJ13 1102 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 MROH9Q5TGP6 573 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 MOXD1Q6UVY6 613 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 LRRC19Q9H756 370 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 PPARGC1AQ9UBK2 798 aaKnown RBP9.1□□□□□ -0.95
USP40-203ENST00000427112 HMGXB4Q9UGU5 601 aa9.1□□□□□ -0.95
USP40-203ENST00000427112 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.1□□□□□ -0.95
USP40-203ENST00000427112 H3BRJ5 948 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 TMEM62Q0P6H9 643 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 ITIH4Q14624 930 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 PDCD7Q8N8D1 485 aaKnown RBP9.09□□□□□ -0.95
USP40-203ENST00000427112 ARL10Q8N8L6 244 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 KCTD6Q8NC69 237 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 ARMC2Q8NEN0 867 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 SERPINB12Q96P63 405 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 PAFAH2Q99487 392 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 RXFP1Q9HBX9 757 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms