RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.3□□□□□ -0.76
USP54-205ENST00000424265 TMBIM4Q9HC24 238 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 CREBZFQ9NS37 354 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.3□□□□□ -0.76
USP54-205ENST00000424265 SLC12A4Q9UP95 1085 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 EPN1Q9Y6I3 576 aaPredicted RBP10.3□□□□□ -0.76
USP54-205ENST00000424265 CCDC162PA2VCL2 907 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 TLR2O60603 784 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 KRT16P08779 473 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 TCP1P17987 556 aaKnown RBP10.3□□□□□ -0.76
USP54-205ENST00000424265 PRKACBP22694 351 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 CCT8P50990 548 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 DPYDQ12882 1025 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 BNIP1Q12981 228 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 LSAMPQ13449 338 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 COBLL1Q53SF7 1204 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 CATSPER3Q86XQ3 398 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 UCMAQ8WVF2 138 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 VPS16Q9H269 839 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 TTC7AQ9ULT0 858 aaPredicted RBP10.3□□□□□ -0.76
USP54-205ENST00000424265 ZNF233A6NK53 670 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 SPATA31C2B4DYI2 1134 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 OXSR1O95747 527 aaPredicted RBP10.3□□□□□ -0.76
USP54-205ENST00000424265 IRF5Q13568 498 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 TYW1BQ6NUM6 668 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 CNOT6LQ96LI5 555 aaKnown RBP10.3□□□□□ -0.76
USP54-205ENST00000424265 INPP4AQ96PE3 977 aaPredicted RBP10.3□□□□□ -0.76
USP54-205ENST00000424265 C1orf112Q9NSG2 853 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 SYNGAP1Q96PV0 1343 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 SLC16A3O15427 465 aaKnown RBP10.3□□□□□ -0.76
USP54-205ENST00000424265 MFAP3LO75121 409 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 AFPP02771 609 aaKnown RBP10.3□□□□□ -0.76
USP54-205ENST00000424265 SARSP49591 514 aaKnown RBP10.3□□□□□ -0.76
USP54-205ENST00000424265 AGBL2Q5U5Z8 902 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 TUBA3EQ6PEY2 450 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 KIAA2013Q8IYS2 634 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 VPS52Q8N1B4 723 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 ACMSDQ8TDX5 336 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 C2orf49Q9BVC5 232 aaPredicted RBP10.3□□□□□ -0.76
USP54-205ENST00000424265 GTF3C4Q9UKN8 822 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 USP15Q9Y4E8 981 aaPredicted RBP10.3□□□□□ -0.76
USP54-205ENST00000424265 IGSF9BQ9UPX0 1349 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 TBKBP1A7MCY6 615 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 CLK2P49760 499 aaKnown RBP10.29□□□□□ -0.76
USP54-205ENST00000424265 ARHGAP24Q8N264 748 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 MMGT1Q8N4V1 131 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 ENGASEQ8NFI3 743 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 TNIP2Q8NFZ5 429 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 ATP8B4Q8TF62 1192 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 SCG3Q8WXD2 468 aaKnown RBP10.29□□□□□ -0.76
USP54-205ENST00000424265 BRI3BPQ8WY22 251 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 TAB2Q9NYJ8 693 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 TCHHQ07283 1943 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 PP2D1A8MPX8 630 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 TJP3O95049 919 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 KRT9P35527 623 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 NR1D2Q14995 579 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 GSTA3Q16772 222 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 EDRF1Q3B7T1 1238 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 WDR45BQ5MNZ6 344 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 OTOP1Q7RTM1 612 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 NOP9Q86U38 636 aaKnown RBP10.29□□□□□ -0.76
USP54-205ENST00000424265 XXYLT1Q8NBI6 393 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 GJA10Q969M2 543 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 CCDC127Q96BQ5 260 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 NSMCE3Q96MG7 304 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 MTG1Q9BT17 334 aaPredicted RBP10.29□□□□□ -0.76
USP54-205ENST00000424265 DCLRE1BQ9H816 532 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 CYP26B1Q9NR63 512 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 PRMT7Q9NVM4 692 aaPredicted RBP10.29□□□□□ -0.76
USP54-205ENST00000424265 ZNF214Q9UL59 606 aaPredicted RBP10.29□□□□□ -0.76
USP54-205ENST00000424265 RGS16O15492 202 aaPredicted RBP10.29□□□□□ -0.76
USP54-205ENST00000424265 BAG2O95816 211 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 ACADVLP49748 655 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 CCNG1P51959 295 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 COPB1P53618 953 aaKnown RBP10.29□□□□□ -0.76
USP54-205ENST00000424265 NCALDP61601 193 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 SUZ12Q15022 739 aaKnown RBP10.29□□□□□ -0.76
USP54-205ENST00000424265 SLC9C1Q4G0N8 1177 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 PALB2Q86YC2 1186 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 FBXO16Q8IX29 292 aaPredicted RBP10.29□□□□□ -0.76
USP54-205ENST00000424265 BBOF1Q8ND07 529 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 CCSER2Q9H7U1 834 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 RPF1Q9H9Y2 349 aaKnown RBP10.29□□□□□ -0.76
USP54-205ENST00000424265 QPCTLQ9NXS2 382 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 HEY1Q9Y5J3 304 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.29□□□□□ -0.76
USP54-205ENST00000424265 ANO9A1A5B4 782 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 GOLGA8IPA6NC78 632 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 OCM2P0CE71 109 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 OCMP0CE72 109 aaPredicted RBP10.29□□□□□ -0.76
USP54-205ENST00000424265 RRP1BQ14684 758 aaKnown RBP10.29□□□□□ -0.76
USP54-205ENST00000424265 ASIC2Q16515 512 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 TMEM119Q4V9L6 283 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 CEP78Q5JTW2 689 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 GNASQ5JWF2 1037 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 AGAP9Q5VTM2 703 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 EXOC3L1Q86VI1 746 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 MGARPQ8TDB4 240 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 FAM193BQ96PV7 902 aaPredicted RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms