RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 PCSK1P29120 753 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 PBX3P40426 434 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 CNGA2Q16280 664 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 ZNF394Q53GI3 561 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 FAM171A1Q5VUB5 890 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 OVOS1Q6IE37 1185 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 RAD9BQ6WBX8 426 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 DDX53Q86TM3 631 aaKnown RBP15.17■□□□□ 0.02
SF3B1-204ENST00000414963 GPR65Q8IYL9 337 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 THEM5Q8N1Q8 247 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 SLC20A1Q8WUM9 679 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 TFAP2BQ92481 460 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 TRIM44Q96DX7 344 aaPredicted RBP15.17■□□□□ 0.02
SF3B1-204ENST00000414963 HEXIM2Q96MH2 286 aaKnown RBP15.17■□□□□ 0.02
SF3B1-204ENST00000414963 EIF3CQ99613 913 aaKnown RBP15.17■□□□□ 0.02
SF3B1-204ENST00000414963 ZSWIM1Q9BR11 485 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 VN1R3Q9BXE9 311 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 OXCT2Q9BYC2 517 aaPredicted RBP15.17■□□□□ 0.02
SF3B1-204ENST00000414963 CHST7Q9NS84 486 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 DDX43Q9NXZ2 648 aaKnown RBP15.17■□□□□ 0.02
SF3B1-204ENST00000414963 CDH9Q9ULB4 789 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 NENFQ9UMX5 172 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 PCDHGC3Q9UN70 934 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 RWDD3Q9Y3V2 267 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 PCDHB12Q9Y5F1 795 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 TIMM13Q9Y5L4 95 aaPredicted RBP15.17■□□□□ 0.02
SF3B1-204ENST00000414963 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.17■□□□□ 0.02
SF3B1-204ENST00000414963 CEP290O15078 2479 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 LCHNA4D1U4 455 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 DDX3XO00571 662 aaKnown RBP eCLIP15.16■□□□□ 0.023e-10■■■■■ 34.8
SF3B1-204ENST00000414963 THAP12O43422 761 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 MED7O43513 233 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 TBC1D4O60343 1298 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 CAPN15O75808 1086 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 NDUFA10O95299 355 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 PDGFRBP09619 1106 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 PTPN1P18031 435 aaKnown RBP15.16■□□□□ 0.02
SF3B1-204ENST00000414963 TNFAIP3P21580 790 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 TKTP29401 623 aaKnown RBP15.16■□□□□ 0.02
SF3B1-204ENST00000414963 CYLC1P35663 651 aaPredicted RBP15.16■□□□□ 0.02
SF3B1-204ENST00000414963 BMPR1AP36894 532 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 KIF11P52732 1056 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 FMO1Q01740 532 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 PLCB3Q01970 1234 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 YWHAHQ04917 246 aaPredicted RBP15.16■□□□□ 0.02
SF3B1-204ENST00000414963 STILQ15468 1287 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 SLC18A3Q16572 532 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 USP41Q3LFD5 358 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 ARHGAP17Q68EM7 881 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 TRIM72Q6ZMU5 477 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 ACOT1Q86TX2 421 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 GPIHBP1Q8IV16 184 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 TMEM169Q96HH4 297 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 PLVAPQ9BX97 442 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 ADAMTS1Q9UHI8 967 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 PCDHA11Q9Y5I1 949 aa15.16■□□□□ 0.02
SF3B1-204ENST00000414963 A0A087X0T9 212 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 LINC01553A4QN01 128 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 H7C4K7 107 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 O00370 1275 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 AKR1B10O60218 316 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 SOD2P04179 222 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 MMEP08473 750 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 FAM228BP0C875 321 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 GZMAP12544 262 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 CD19P15391 556 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 BRD2P25440 801 aaKnown RBP15.15■□□□□ 0.02
SF3B1-204ENST00000414963 MTF1Q14872 753 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 SGO2Q562F6 1265 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 VARS2Q5ST30 1063 aaKnown RBP15.15■□□□□ 0.02
SF3B1-204ENST00000414963 KIAA0319Q5VV43 1072 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 FAM171BQ6P995 826 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 LCLAT1Q6UWP7 414 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 ANKS3Q6ZW76 656 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 TAS1R1Q7RTX1 841 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 GLYCTKQ8IVS8 523 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 B3GALNT2Q8NCR0 500 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 LNX1Q8TBB1 728 aaPredicted RBP15.15■□□□□ 0.02
SF3B1-204ENST00000414963 PKMYT1Q99640 499 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 TTPALQ9BTX7 342 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 LHX5Q9H2C1 402 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 DPEP3Q9H4B8 488 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 DEF6Q9H4E7 631 aa15.15■□□□□ 0.02
SF3B1-204ENST00000414963 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.14■□□□□ 0.01
SF3B1-204ENST00000414963 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.14■□□□□ 0.01
SF3B1-204ENST00000414963 OR6C75A6NL08 312 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 GRXCR1A8MXD5 290 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 C5orf67F2Z3F1 127 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 HCRTO43612 131 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 FGF18O76093 207 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 LSM8O95777 96 aaKnown RBP15.14■□□□□ 0.01
SF3B1-204ENST00000414963 CALCAP01258 141 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 CYP1A1P04798 512 aaPredicted RBP15.14■□□□□ 0.01
SF3B1-204ENST00000414963 RB1P06400 928 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 CDH5P33151 784 aaPredicted RBP15.14■□□□□ 0.01
SF3B1-204ENST00000414963 RABGGTBP53611 331 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 DSG1Q02413 1049 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 KRT17Q04695 432 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 ORC1Q13415 861 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 INTS6LQ5JSJ4 861 aaKnown RBP15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms