RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 FNTAP49354 379 aa21.92■■□□□ 1.1
USP39-203ENST00000409470 SNX17Q15036 470 aa21.92■■□□□ 1.1
USP39-203ENST00000409470 PTPN20Q4JDL3 420 aa21.92■■□□□ 1.1
USP39-203ENST00000409470 DPH6Q7L8W6 267 aa21.92■■□□□ 1.1
USP39-203ENST00000409470 KATNAL2Q8IYT4 538 aa21.92■■□□□ 1.1
USP39-203ENST00000409470 C12orf50Q8NA57 414 aaPredicted RBP21.92■■□□□ 1.1
USP39-203ENST00000409470 APOL6Q9BWW8 343 aa21.92■■□□□ 1.1
USP39-203ENST00000409470 CXCL16Q9H2A7 254 aa21.92■■□□□ 1.1
USP39-203ENST00000409470 FAM155AB1AL88 458 aaPredicted RBP21.91■■□□□ 1.1
USP39-203ENST00000409470 GOLGA8SH3BPF8 625 aa21.91■■□□□ 1.1
USP39-203ENST00000409470 MICAL2O94851 1124 aa21.91■■□□□ 1.1
USP39-203ENST00000409470 VDRP11473 427 aa21.91■■□□□ 1.1
USP39-203ENST00000409470 NDST1P52848 882 aa21.91■■□□□ 1.1
USP39-203ENST00000409470 ZFYVE27Q5T4F4 411 aa21.91■■□□□ 1.1
USP39-203ENST00000409470 TTC39CQ8N584 583 aa21.91■■□□□ 1.1
USP39-203ENST00000409470 TMEM40Q8WWA1 233 aa21.91■■□□□ 1.1
USP39-203ENST00000409470 C1orf54Q8WWF1 131 aa21.91■■□□□ 1.1
USP39-203ENST00000409470 ZMAT2Q96NC0 199 aaKnown RBP21.91■■□□□ 1.1
USP39-203ENST00000409470 NXF3Q9H4D5 531 aaKnown RBP21.91■■□□□ 1.1
USP39-203ENST00000409470 LRRC19Q9H756 370 aa21.91■■□□□ 1.1
USP39-203ENST00000409470 FAM204AQ9H8W3 233 aa21.91■■□□□ 1.1
USP39-203ENST00000409470 CYTH4Q9UIA0 394 aa21.91■■□□□ 1.1
USP39-203ENST00000409470 PTPN22Q9Y2R2 807 aa21.91■■□□□ 1.1
USP39-203ENST00000409470 SNX24Q9Y343 169 aa21.91■■□□□ 1.1
USP39-203ENST00000409470 IGHA2P01877 340 aa21.9■■□□□ 1.1
USP39-203ENST00000409470 C6orf222P0C671 652 aaPredicted RBP21.9■■□□□ 1.1
USP39-203ENST00000409470 CTGFP29279 349 aa21.9■■□□□ 1.1
USP39-203ENST00000409470 KCNJ1P48048 391 aa21.9■■□□□ 1.1
USP39-203ENST00000409470 PURAQ00577 322 aaKnown RBP21.9■■□□□ 1.1
USP39-203ENST00000409470 PPP1R15BQ5SWA1 713 aa21.9■■□□□ 1.1
USP39-203ENST00000409470 ZNF771Q7L3S4 317 aaPredicted RBP21.9■■□□□ 1.1
USP39-203ENST00000409470 IQCKQ8N0W5 287 aa21.9■■□□□ 1.1
USP39-203ENST00000409470 BEST2Q8NFU1 509 aa21.9■■□□□ 1.1
USP39-203ENST00000409470 SH3GL2Q99962 352 aa21.9■■□□□ 1.1
USP39-203ENST00000409470 ABT1Q9ULW3 272 aaKnown RBP21.9■■□□□ 1.1
USP39-203ENST00000409470 TLL2Q9Y6L7 1015 aa21.9■■□□□ 1.1
USP39-203ENST00000409470 M0QYV0 167 aa21.9■■□□□ 1.1
USP39-203ENST00000409470 RECQL4O94761 1208 aa21.9■■□□□ 1.1
USP39-203ENST00000409470 RALAP11233 206 aa21.9■■□□□ 1.1
USP39-203ENST00000409470 PSMC1P62191 440 aaKnown RBP21.9■■□□□ 1.1
USP39-203ENST00000409470 ZNF252P-AS1Q0IIN9 211 aa21.9■■□□□ 1.1
USP39-203ENST00000409470 INCA1Q0VD86 236 aa21.9■■□□□ 1.1
USP39-203ENST00000409470 PIGHQ14442 188 aaPredicted RBP21.9■■□□□ 1.1
USP39-203ENST00000409470 GLRA4Q5JXX5 417 aa21.9■■□□□ 1.1
USP39-203ENST00000409470 EXD1Q8NHP7 514 aa21.9■■□□□ 1.1
USP39-203ENST00000409470 FMO2Q99518 471 aa21.9■■□□□ 1.1
USP39-203ENST00000409470 HEMGNQ9BXL5 484 aa21.9■■□□□ 1.1
USP39-203ENST00000409470 TUBGCP4Q9UGJ1 667 aa21.9■■□□□ 1.1
USP39-203ENST00000409470 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.9■■□□□ 1.1
USP39-203ENST00000409470 TRIP12Q14669 1992 aaPredicted RBP21.9■■□□□ 1.1
USP39-203ENST00000409470 TRIP11Q15643 1979 aa21.89■■□□□ 1.1
USP39-203ENST00000409470 GOLGA8KD6RF30 607 aa21.89■■□□□ 1.1
USP39-203ENST00000409470 AKAP5P24588 427 aa21.89■■□□□ 1.1
USP39-203ENST00000409470 FLT3P36888 993 aa21.89■■□□□ 1.1
USP39-203ENST00000409470 DRG2P55039 364 aaKnown RBP21.89■■□□□ 1.1
USP39-203ENST00000409470 OGDHQ02218 1023 aa21.89■■□□□ 1.1
USP39-203ENST00000409470 DMTNQ08495 405 aa21.89■■□□□ 1.1
USP39-203ENST00000409470 SNX1Q13596 522 aa21.89■■□□□ 1.1
USP39-203ENST00000409470 CNGA2Q16280 664 aa21.89■■□□□ 1.1
USP39-203ENST00000409470 PIK3R5Q8WYR1 880 aa21.89■■□□□ 1.1
USP39-203ENST00000409470 EXOC4Q96A65 974 aa21.89■■□□□ 1.1
USP39-203ENST00000409470 NT5C1AQ9BXI3 368 aa21.89■■□□□ 1.1
USP39-203ENST00000409470 FAM124BQ9H5Z6 455 aaPredicted RBP21.89■■□□□ 1.1
USP39-203ENST00000409470 TJP2Q9UDY2 1190 aa21.89■■□□□ 1.1
USP39-203ENST00000409470 PASKQ96RG2 1323 aa21.89■■□□□ 1.09
USP39-203ENST00000409470 F8VP50 259 aa21.89■■□□□ 1.09
USP39-203ENST00000409470 DUSP11O75319 330 aaKnown RBP21.89■■□□□ 1.09
USP39-203ENST00000409470 ECEL1O95672 775 aa21.89■■□□□ 1.09
USP39-203ENST00000409470 HMGCRP04035 888 aa21.89■■□□□ 1.09
USP39-203ENST00000409470 KRT3P12035 628 aa21.89■■□□□ 1.09
USP39-203ENST00000409470 HSD17B3P37058 310 aa21.89■■□□□ 1.09
USP39-203ENST00000409470 CETN2P41208 172 aa21.89■■□□□ 1.09
USP39-203ENST00000409470 CRYBB1P53674 252 aaPredicted RBP21.89■■□□□ 1.09
USP39-203ENST00000409470 NME8Q8N427 588 aa21.89■■□□□ 1.09
USP39-203ENST00000409470 TRPV1Q8NER1 839 aa21.89■■□□□ 1.09
USP39-203ENST00000409470 C18orf25Q96B23 403 aaPredicted RBP21.89■■□□□ 1.09
USP39-203ENST00000409470 CPXM1Q96SM3 734 aa21.89■■□□□ 1.09
USP39-203ENST00000409470 HERPUD2Q9BSE4 406 aa21.89■■□□□ 1.09
USP39-203ENST00000409470 SNX9Q9Y5X1 595 aa21.89■■□□□ 1.09
USP39-203ENST00000409470 RALGAPA2Q2PPJ7 1873 aa21.88■■□□□ 1.09
USP39-203ENST00000409470 MYADML2A6NDP7 307 aa21.88■■□□□ 1.09
USP39-203ENST00000409470 CA12O43570 354 aa21.88■■□□□ 1.09
USP39-203ENST00000409470 PLTPP55058 493 aa21.88■■□□□ 1.09
USP39-203ENST00000409470 PPP1R7Q15435 360 aa21.88■■□□□ 1.09
USP39-203ENST00000409470 ZBTB6Q15916 424 aa21.88■■□□□ 1.09
USP39-203ENST00000409470 ODF2Q5BJF6 829 aa21.88■■□□□ 1.09
USP39-203ENST00000409470 RNF25Q96BH1 459 aaPredicted RBP21.88■■□□□ 1.09
USP39-203ENST00000409470 OSBPL8Q9BZF1 889 aa21.88■■□□□ 1.09
USP39-203ENST00000409470 KLHL11Q9NVR0 708 aa21.88■■□□□ 1.09
USP39-203ENST00000409470 CNTN3Q9P232 1028 aa21.88■■□□□ 1.09
USP39-203ENST00000409470 WDR35Q9P2L0 1181 aa21.88■■□□□ 1.09
USP39-203ENST00000409470 PLAAQ9Y263 795 aa21.88■■□□□ 1.09
USP39-203ENST00000409470 PCNTO95613 3336 aa21.88■■□□□ 1.09
USP39-203ENST00000409470 GOLGA6CA6NDK9 693 aa21.87■■□□□ 1.09
USP39-203ENST00000409470 SIGLEC16A6NMB1 481 aa21.87■■□□□ 1.09
USP39-203ENST00000409470 PPEF2O14830 753 aa21.87■■□□□ 1.09
USP39-203ENST00000409470 GOLGA6DP0CG33 693 aa21.87■■□□□ 1.09
USP39-203ENST00000409470 TCF4P15884 667 aa21.87■■□□□ 1.09
USP39-203ENST00000409470 GBP1P32455 592 aa21.87■■□□□ 1.09
USP39-203ENST00000409470 FCGRTP55899 365 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms