RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 DHX38Q92620 1227 aaKnown RBP13.65□□□□□ -0.22
PTPRN-202ENST00000409251 LPAR1Q92633 364 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 HIC2Q96JB3 615 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 AS3MTQ9HBK9 375 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 USP2O75604 605 aaPredicted RBP13.65□□□□□ -0.22
PTPRN-202ENST00000409251 BCRP11274 1271 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 PPP2R5EQ16537 467 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 GALNTL6Q49A17 601 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.65□□□□□ -0.22
PTPRN-202ENST00000409251 SLC47A2Q86VL8 602 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 TRIM50Q86XT4 487 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 ANKLE1Q8NAG6 615 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 MTMR14Q8NCE2 650 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 CPA5Q8WXQ8 436 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 TMEM143Q96AN5 459 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 PXMP2Q9NR77 195 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 ETNK2Q9NVF9 386 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 O00370 1275 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 CSDE1O75534 798 aaKnown RBP13.64□□□□□ -0.23
PTPRN-202ENST00000409251 AMPD1P23109 780 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 CIITAP33076 1130 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 PTGIRP43119 386 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 SNF8Q96H20 258 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 PLVAPQ9BX97 442 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 STXBP5LQ9Y2K9 1186 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 IKBKGQ9Y6K9 419 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 RALAP11233 206 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 PPATQ06203 517 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 EFTUD2Q15029 972 aaKnown RBP eCLIP13.64□□□□□ -0.23
PTPRN-202ENST00000409251 PHLDB3Q6NSJ2 640 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 RIBC1Q8N443 379 aaPredicted RBP13.64□□□□□ -0.23
PTPRN-202ENST00000409251 SLC26A7Q8TE54 656 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 SERPINB12Q96P63 405 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 SGIP1Q9BQI5 828 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 METTL14Q9HCE5 456 aaKnown RBP13.64□□□□□ -0.23
PTPRN-202ENST00000409251 GINM1Q9NU53 330 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 LRCH1Q9Y2L9 728 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 CIB2O75838 187 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 TPP2P29144 1249 aaPredicted RBP13.64□□□□□ -0.23
PTPRN-202ENST00000409251 ARFIP2P53365 341 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 ALDH18A1P54886 795 aaKnown RBP13.64□□□□□ -0.23
PTPRN-202ENST00000409251 TBC1D25Q3MII6 688 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 SUPT20HL1Q3ZLR7 823 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 FRMD5Q7Z6J6 570 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 ZBTB46Q86UZ6 589 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 PRPF31Q8WWY3 499 aaKnown RBP13.64□□□□□ -0.23
PTPRN-202ENST00000409251 TMEM117Q9H0C3 514 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 AGO4Q9HCK5 861 aaKnown RBP13.64□□□□□ -0.23
PTPRN-202ENST00000409251 GINS2Q9Y248 185 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 PCDHA2Q9Y5H9 948 aa13.64□□□□□ -0.23
PTPRN-202ENST00000409251 LAMA2P24043 3122 aaKnown RBP13.64□□□□□ -0.23
PTPRN-202ENST00000409251 PIK3CDO00329 1044 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 POLR2AP24928 1970 aaKnown RBP13.63□□□□□ -0.23
PTPRN-202ENST00000409251 MAGEA4P43358 317 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 QARSP47897 775 aaKnown RBP13.63□□□□□ -0.23
PTPRN-202ENST00000409251 IGBP1P78318 339 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 GPS1Q13098 491 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 BBS9Q3SYG4 887 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 C1orf186Q6ZWK4 172 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 RASSF3Q86WH2 238 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 ARHGEF19Q8IW93 802 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 PPP1R14CQ8TAE6 165 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 PYDC1Q8WXC3 89 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 TUBGCP5Q96RT8 1024 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 PI4K2AQ9BTU6 479 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 CYP3A4P08684 503 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 USP46P62068 366 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 PDIA2Q13087 525 aaKnown RBP13.63□□□□□ -0.23
PTPRN-202ENST00000409251 ORC2Q13416 577 aaPredicted RBP13.63□□□□□ -0.23
PTPRN-202ENST00000409251 ACAP1Q15027 740 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 DBN1Q16643 649 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 TRMT10CQ7L0Y3 403 aaKnown RBP13.63□□□□□ -0.23
PTPRN-202ENST00000409251 ASRGL1Q7L266 308 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 OTOAQ7RTW8 1153 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 APOBEC3FQ8IUX4 373 aaKnown RBP13.63□□□□□ -0.23
PTPRN-202ENST00000409251 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.63□□□□□ -0.23
PTPRN-202ENST00000409251 GPC2Q8N158 579 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 CADM1Q9BY67 442 aaKnown RBP13.63□□□□□ -0.23
PTPRN-202ENST00000409251 STK33Q9BYT3 514 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 VCX3BQ9H321 246 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 VCX3AQ9NNX9 186 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 CHCHD3Q9NX63 227 aaKnown RBP13.63□□□□□ -0.23
PTPRN-202ENST00000409251 APEX2Q9UBZ4 518 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 SPDYE16A6NNV3 312 aaPredicted RBP13.63□□□□□ -0.23
PTPRN-202ENST00000409251 TGFB1I1O43294 461 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 OR6B1O95007 311 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 ALADP13716 330 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 PDE1CQ14123 709 aaPredicted RBP13.63□□□□□ -0.23
PTPRN-202ENST00000409251 RHOT2Q8IXI1 618 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 OPTNQ96CV9 577 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 TYW1Q9NV66 732 aaKnown RBP13.63□□□□□ -0.23
PTPRN-202ENST00000409251 BTBD7Q9P203 1132 aa13.63□□□□□ -0.23
PTPRN-202ENST00000409251 ASTN1O14525 1302 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 SGK1O00141 431 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 TBX3O15119 743 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 TJP3O95049 919 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 GCLCP48506 637 aaPredicted RBP13.62□□□□□ -0.23
PTPRN-202ENST00000409251 PCNX4Q63HM2 1172 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 NRG4Q8WWG1 115 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 FNBP1Q96RU3 617 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms