RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ARL4CP56559 192 aa12.52□□□□□ -0.4
HMGB1-206ENST00000405805 FMO1Q01740 532 aa12.52□□□□□ -0.4
HMGB1-206ENST00000405805 NLRP9Q7RTR0 991 aa12.52□□□□□ -0.4
HMGB1-206ENST00000405805 RASGEF1CQ8N431 466 aa12.52□□□□□ -0.4
HMGB1-206ENST00000405805 EPAS1Q99814 870 aa12.52□□□□□ -0.4
HMGB1-206ENST00000405805 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.52□□□□□ -0.45e-9■■■■■ 39.6
HMGB1-206ENST00000405805 GRHL1Q9NZI5 618 aa12.52□□□□□ -0.4
HMGB1-206ENST00000405805 PCDHB2Q9Y5E7 798 aa12.52□□□□□ -0.4
HMGB1-206ENST00000405805 CES2O00748 559 aa12.52□□□□□ -0.41
HMGB1-206ENST00000405805 COPEO14579 308 aa12.52□□□□□ -0.41
HMGB1-206ENST00000405805 CACNA2D1P54289 1103 aa12.52□□□□□ -0.41
HMGB1-206ENST00000405805 ALDH18A1P54886 795 aaKnown RBP12.52□□□□□ -0.41
HMGB1-206ENST00000405805 MARSP56192 900 aaKnown RBP12.52□□□□□ -0.41
HMGB1-206ENST00000405805 PDE1BQ01064 536 aa12.52□□□□□ -0.41
HMGB1-206ENST00000405805 C11orf63Q6NUN7 778 aa12.52□□□□□ -0.41
HMGB1-206ENST00000405805 TMEM8AQ9HCN3 771 aa12.52□□□□□ -0.41
HMGB1-206ENST00000405805 RNF146Q9NTX7 359 aa12.52□□□□□ -0.41
HMGB1-206ENST00000405805 TMEM59LQ9UK28 342 aa12.52□□□□□ -0.41
HMGB1-206ENST00000405805 FZD1Q9UP38 647 aa12.52□□□□□ -0.41
HMGB1-206ENST00000405805 PCDHA3Q9Y5H8 950 aa12.52□□□□□ -0.41
HMGB1-206ENST00000405805 MYH3P11055 1940 aa12.52□□□□□ -0.41
HMGB1-206ENST00000405805 GMNNO75496 209 aa12.52□□□□□ -0.41
HMGB1-206ENST00000405805 RTN3O95197 1032 aaPredicted RBP12.52□□□□□ -0.41
HMGB1-206ENST00000405805 UTS2BQ765I0 119 aa12.52□□□□□ -0.41
HMGB1-206ENST00000405805 CCDC125Q86Z20 511 aa12.52□□□□□ -0.41
HMGB1-206ENST00000405805 SLC25A41Q8N5S1 370 aa12.52□□□□□ -0.41
HMGB1-206ENST00000405805 SMYD2Q9NRG4 433 aa12.52□□□□□ -0.41
HMGB1-206ENST00000405805 VAV3Q9UKW4 847 aa12.52□□□□□ -0.41
HMGB1-206ENST00000405805 CICQ96RK0 1608 aaPredicted RBP12.52□□□□□ -0.41
HMGB1-206ENST00000405805 RBM47A0AV96 593 aaKnown RBP12.51□□□□□ -0.41
HMGB1-206ENST00000405805 EDIL3O43854 480 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 STK10O94804 968 aaKnown RBP12.51□□□□□ -0.41
HMGB1-206ENST00000405805 KRT75O95678 551 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 ADRA1DP25100 572 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 RPA3P35244 121 aaPredicted RBP12.51□□□□□ -0.41
HMGB1-206ENST00000405805 TPD52P55327 224 aaPredicted RBP12.51□□□□□ -0.41
HMGB1-206ENST00000405805 MPP3Q13368 585 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 FASTKD3Q14CZ7 662 aaKnown RBP12.51□□□□□ -0.41
HMGB1-206ENST00000405805 RCN1Q15293 331 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 CIAPIN1Q6FI81 312 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 MFSD7Q6UXD7 560 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 SH3BP5LQ7L8J4 393 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 WDR60Q8WVS4 1066 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 VTI1AQ96AJ9 217 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 DCLK3Q9C098 648 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 C2orf71A6NGG8 1288 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 ITGB5P18084 799 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 MLH1P40692 756 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 TFDP1Q14186 410 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 RNF220Q5VTB9 566 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 NXNQ6DKJ4 435 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 SNRNP48Q6IEG0 339 aaKnown RBP12.51□□□□□ -0.41
HMGB1-206ENST00000405805 TMEM35BQ8NCS4 154 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 DDX50Q9BQ39 737 aaKnown RBP12.51□□□□□ -0.41
HMGB1-206ENST00000405805 HERC5Q9UII4 1024 aaKnown RBP12.51□□□□□ -0.41
HMGB1-206ENST00000405805 FIS1Q9Y3D6 152 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 PCDHA10Q9Y5I2 948 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 LOC100653049A0A140TA62 436 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 A0A1W2PPM1 405 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 CCDC78A2IDD5 438 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 F8VP50 259 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 H3BRJ5 948 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 PSMD10O75832 226 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 KRT34O76011 436 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 APRTP07741 180 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 SNHG28P0DPA3 235 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 DPEP1P16444 411 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 TUFMP49411 452 aaKnown RBP12.51□□□□□ -0.41
HMGB1-206ENST00000405805 JAM2P57087 298 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 TKFCQ3LXA3 575 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 RSBN1LQ6PCB5 846 aaPredicted RBP12.51□□□□□ -0.41
HMGB1-206ENST00000405805 SULF1Q8IWU6 871 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 HEXIM2Q96MH2 286 aaKnown RBP12.51□□□□□ -0.41
HMGB1-206ENST00000405805 NDNQ99608 321 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 THTPAQ9BU02 230 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 KIAA1683Q9H0B3 1180 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 RXFP1Q9HBX9 757 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 ZNF180Q9UJW8 692 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 PDE4DIPQ5VU43 2346 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 MYH7P12883 1935 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 CFLARO15519 480 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 ATP9AO75110 1047 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 ENTPD3O75355 529 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 NUDT17P0C025 328 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 RFX1P22670 979 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 GSTT1P30711 240 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 PGM1P36871 562 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 CLK2P49760 499 aaKnown RBP12.51□□□□□ -0.41
HMGB1-206ENST00000405805 RPL7AP62424 266 aaKnown RBP12.51□□□□□ -0.41
HMGB1-206ENST00000405805 XRCC4Q13426 336 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 C1orf146Q5VVC0 180 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 SAMD7Q7Z3H4 446 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 RBM41Q96IZ5 413 aaKnown RBP12.51□□□□□ -0.41
HMGB1-206ENST00000405805 APOL6Q9BWW8 343 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 TSSK1BQ9BXA7 367 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 IFT122Q9HBG6 1241 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 ZDHHC18Q9NUE0 388 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 PIH1D1Q9NWS0 290 aaKnown RBP12.51□□□□□ -0.41
HMGB1-206ENST00000405805 SATB2Q9UPW6 733 aa12.51□□□□□ -0.41
HMGB1-206ENST00000405805 ROBO3Q96MS0 1386 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms