RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 INCA1Q0VD86 236 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 SMC1AQ14683 1233 aaKnown RBP17.03■□□□□ 0.32
HMGA1-204ENST00000401473 CCDC142Q17RM4 750 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 UVSSAQ2YD98 709 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 METTL23Q86XA0 190 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 UBR7Q8N806 425 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 GAS2L1Q99501 681 aaPredicted RBP17.03■□□□□ 0.32
HMGA1-204ENST00000401473 DPEP3Q9H4B8 488 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 DNAJC12Q9UKB3 198 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 BACE2Q9Y5Z0 518 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 FHOD1Q9Y613 1164 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 A0A1W2PQC6 194 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 ARHGEF37A1IGU5 675 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 TBXAS1P24557 533 aaPredicted RBP17.03■□□□□ 0.32
HMGA1-204ENST00000401473 ORC1Q13415 861 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 PTPROQ16827 1216 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 ZNF394Q53GI3 561 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 IQCEQ6IPM2 695 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 SLC8B1Q6J4K2 584 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 PDE12Q6L8Q7 609 aaKnown RBP17.03■□□□□ 0.32
HMGA1-204ENST00000401473 RBM23Q86U06 439 aaKnown RBP17.03■□□□□ 0.32
HMGA1-204ENST00000401473 KLHL5Q96PQ7 755 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 ACBD6Q9BR61 282 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 GPR88Q9GZN0 384 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 LMCD1Q9NZU5 365 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 FNIP2Q9P278 1114 aa17.03■□□□□ 0.32
HMGA1-204ENST00000401473 BARX2Q9UMQ3 279 aaPredicted RBP17.03■□□□□ 0.32
HMGA1-204ENST00000401473 A8MXQ7 604 aa17.02■□□□□ 0.32
HMGA1-204ENST00000401473 CILPO75339 1184 aa17.02■□□□□ 0.32
HMGA1-204ENST00000401473 ARHGAP44Q17R89 818 aa17.02■□□□□ 0.32
HMGA1-204ENST00000401473 ZNF280DQ6N043 979 aa17.02■□□□□ 0.32
HMGA1-204ENST00000401473 THEM5Q8N1Q8 247 aa17.02■□□□□ 0.32
HMGA1-204ENST00000401473 SPATA18Q8TC71 538 aa17.02■□□□□ 0.32
HMGA1-204ENST00000401473 PCMTD1Q96MG8 357 aaPredicted RBP17.02■□□□□ 0.32
HMGA1-204ENST00000401473 TRIM5Q9C035 493 aa17.02■□□□□ 0.32
HMGA1-204ENST00000401473 SNX25Q9H3E2 840 aa17.02■□□□□ 0.32
HMGA1-204ENST00000401473 GTF3C4Q9UKN8 822 aa17.02■□□□□ 0.32
HMGA1-204ENST00000401473 SSX2IPQ9Y2D8 614 aa17.02■□□□□ 0.32
HMGA1-204ENST00000401473 FSD2A1L4K1 749 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 MYBPHLA2RUH7 354 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 H7C4K7 107 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 FOXN3O00409 490 aaPredicted RBP17.01■□□□□ 0.31
HMGA1-204ENST00000401473 FOSL2P15408 326 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 GTF2F1P35269 517 aaKnown RBP eCLIP17.01■□□□□ 0.31
HMGA1-204ENST00000401473 POLR2FP61218 127 aaKnown RBP17.01■□□□□ 0.31
HMGA1-204ENST00000401473 PSMC1P62191 440 aaKnown RBP17.01■□□□□ 0.31
HMGA1-204ENST00000401473 PALB2Q86YC2 1186 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 PKMYT1Q99640 499 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 ELOVL4Q9GZR5 314 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 NLRC4Q9NPP4 1024 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 TMLHEQ9NVH6 421 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 WDR27A2RRH5 827 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 PNMA6AP0CW24 399 aaPredicted RBP17.01■□□□□ 0.31
HMGA1-204ENST00000401473 RAD23BP54727 409 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 MFAP3P55082 362 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 ARPP19P56211 112 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 ROR1Q01973 937 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 BMS1Q14692 1282 aaKnown RBP17.01■□□□□ 0.31
HMGA1-204ENST00000401473 PDXDC1Q6P996 788 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 ACOT1Q86TX2 421 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 C12orf29Q8N999 325 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 NEK11Q8NG66 645 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 ZCWPW1Q9H0M4 648 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 CRTAC1Q9NQ79 661 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.01■□□□□ 0.317e-16■■□□□ 11.5
HMGA1-204ENST00000401473 CNTN6Q9UQ52 1028 aa17.01■□□□□ 0.31
HMGA1-204ENST00000401473 MTCL1Q9Y4B5 1905 aaKnown RBP17■□□□□ 0.31
HMGA1-204ENST00000401473 RBM10P98175 930 aaKnown RBP17■□□□□ 0.31
HMGA1-204ENST00000401473 DRAP1Q14919 205 aaPredicted RBP17■□□□□ 0.31
HMGA1-204ENST00000401473 TCEAL5Q5H9L2 206 aa17■□□□□ 0.31
HMGA1-204ENST00000401473 FAM171BQ6P995 826 aa17■□□□□ 0.31
HMGA1-204ENST00000401473 LILRA6Q6PI73 481 aa17■□□□□ 0.31
HMGA1-204ENST00000401473 TMEM270Q6UE05 265 aa17■□□□□ 0.31
HMGA1-204ENST00000401473 RNF19BQ6ZMZ0 732 aa17■□□□□ 0.31
HMGA1-204ENST00000401473 UNC93AQ86WB7 457 aa17■□□□□ 0.31
HMGA1-204ENST00000401473 CRYBG2Q8N1P7 616 aa17■□□□□ 0.31
HMGA1-204ENST00000401473 MICALL1Q8N3F8 863 aa17■□□□□ 0.31
HMGA1-204ENST00000401473 SLC4A11Q8NBS3 891 aa17■□□□□ 0.31
HMGA1-204ENST00000401473 SHC3Q92529 594 aa17■□□□□ 0.31
HMGA1-204ENST00000401473 JAKMIP2Q96AA8 810 aa17■□□□□ 0.31
HMGA1-204ENST00000401473 TTYH3Q9C0H2 523 aa17■□□□□ 0.31
HMGA1-204ENST00000401473 ACP6Q9NPH0 428 aa17■□□□□ 0.31
HMGA1-204ENST00000401473 OR6C75A6NL08 312 aa16.99■□□□□ 0.31
HMGA1-204ENST00000401473 CBFA2T2O43439 604 aa16.99■□□□□ 0.31
HMGA1-204ENST00000401473 CLASP2O75122 1294 aaKnown RBP16.99■□□□□ 0.31
HMGA1-204ENST00000401473 ABLIM3O94929 683 aa16.99■□□□□ 0.31
HMGA1-204ENST00000401473 VNN2O95498 520 aa16.99■□□□□ 0.31
HMGA1-204ENST00000401473 CALCAP01258 141 aa16.99■□□□□ 0.31
HMGA1-204ENST00000401473 SPATA31D3P0C874 917 aa16.99■□□□□ 0.31
HMGA1-204ENST00000401473 PTPN1P18031 435 aaKnown RBP16.99■□□□□ 0.31
HMGA1-204ENST00000401473 KLRC2P26717 231 aa16.99■□□□□ 0.31
HMGA1-204ENST00000401473 PCSK1P29120 753 aa16.99■□□□□ 0.31
HMGA1-204ENST00000401473 NRIP1P48552 1158 aa16.99■□□□□ 0.31
HMGA1-204ENST00000401473 PLXNA3P51805 1871 aa16.99■□□□□ 0.31
HMGA1-204ENST00000401473 GPR17Q13304 367 aa16.99■□□□□ 0.31
HMGA1-204ENST00000401473 RAPGEF1Q13905 1077 aa16.99■□□□□ 0.31
HMGA1-204ENST00000401473 RAB33AQ14088 237 aa16.99■□□□□ 0.31
HMGA1-204ENST00000401473 CCDC85BQ15834 202 aaPredicted RBP16.99■□□□□ 0.31
HMGA1-204ENST00000401473 INTS6LQ5JSJ4 861 aaKnown RBP16.99■□□□□ 0.31
HMGA1-204ENST00000401473 SPATA31D4Q6ZUB0 917 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms