RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 MBNL2Q5VZF2 373 aaKnown RBP4.63□□□□□ -1.67
HMGB1-204ENST00000399489 RTN4RL1Q86UN2 441 aaPredicted RBP4.63□□□□□ -1.67
HMGB1-204ENST00000399489 C1orf210Q8IVY1 113 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 HIPK4Q8NE63 616 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 C7orf26Q96N11 449 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 SPAG5Q96R06 1193 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 CNPPD1Q9BV87 410 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 AGXT2Q9BYV1 514 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 OR10A2Q9H208 303 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 SMURF1Q9HCE7 757 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 OBP2BQ9NPH6 170 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 TBC1D29Q9UFV1 150 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 EDARQ9UNE0 448 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 NR2E3Q9Y5X4 410 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 WDR33Q9C0J8 1336 aaKnown RBP4.63□□□□□ -1.67
HMGB1-204ENST00000399489 MAFO75444 373 aaPredicted RBP4.63□□□□□ -1.67
HMGB1-204ENST00000399489 AMY2AP04746 511 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 AMY2BP19961 511 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 EEF1GP26641 437 aaKnown RBP4.63□□□□□ -1.67
HMGB1-204ENST00000399489 SLC5A3P53794 718 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 MAP3K12Q12852 859 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 KRT32Q14532 448 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 NOLC1Q14978 699 aaKnown RBP eCLIP4.63□□□□□ -1.67
HMGB1-204ENST00000399489 PCOLCEQ15113 449 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 STILQ15468 1287 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 ARL13BQ3SXY8 428 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 KLHDC7AQ5VTJ3 777 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 MAMDC4Q6UXC1 1216 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 LCA5Q86VQ0 697 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 CXorf67Q86X51 503 aaPredicted RBP4.63□□□□□ -1.67
HMGB1-204ENST00000399489 VSIG1Q86XK7 387 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 BRSK2Q8IWQ3 736 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 CCDC191Q8NCU4 936 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 ADAMTS15Q8TE58 950 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 ANKS1AQ92625 1134 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 EXTL1Q92935 676 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 ZNF503Q96F45 646 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 MAELQ96JY0 434 aaKnown RBP4.63□□□□□ -1.67
HMGB1-204ENST00000399489 SLF1Q9BQI6 1058 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 TXLNGYQ9BZA5 131 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 KIAA1683Q9H0B3 1180 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 OR10A5Q9H207 317 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 C14orf93Q9H972 538 aaKnown RBP4.63□□□□□ -1.67
HMGB1-204ENST00000399489 ORC3Q9UBD5 711 aaPredicted RBP4.63□□□□□ -1.67
HMGB1-204ENST00000399489 DENND2AQ9ULE3 1009 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 FAM184BQ9ULE4 1060 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 SH3BP1Q9Y3L3 701 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 CEP83Q9Y592 693 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 SLC12A8A0AV02 714 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 CCDC154A6NI56 674 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 H7C0S8 307 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 DAPK3O43293 454 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 HTRA2O43464 458 aaPredicted RBP4.62□□□□□ -1.67
HMGB1-204ENST00000399489 URI1O94763 535 aaPredicted RBP4.62□□□□□ -1.67
HMGB1-204ENST00000399489 SLC3A2P08195 630 aaKnown RBP4.62□□□□□ -1.67
HMGB1-204ENST00000399489 MTHFD2P13995 350 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 CD40P25942 277 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 ACRV1P26436 265 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 HIBADHP31937 336 aaKnown RBP4.62□□□□□ -1.67
HMGB1-204ENST00000399489 MRE11P49959 708 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 KIF11P52732 1056 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 MANFP55145 182 aaKnown RBP4.62□□□□□ -1.67
HMGB1-204ENST00000399489 CREMQ03060 361 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 CDC16Q13042 620 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 ERV3-1Q14264 604 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 TIGD6Q17RP2 521 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 CRB2Q5IJ48 1285 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 GJC2Q5T442 439 aaPredicted RBP4.62□□□□□ -1.67
HMGB1-204ENST00000399489 HAUS3Q68CZ6 603 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 GRAMD4Q6IC98 578 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 KRT74Q7RTS7 529 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 UBE2Q1Q7Z7E8 422 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 ADGRE4PQ86SQ3 457 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 SGMS1Q86VZ5 419 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 TRMT2AQ8IZ69 625 aaKnown RBP4.62□□□□□ -1.67
HMGB1-204ENST00000399489 STT3BQ8TCJ2 826 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 SPPL3Q8TCT6 385 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 RFFLQ8WZ73 363 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 RILPL2Q969X0 211 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 TIGD1Q96MW7 591 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 ADPGKQ9BRR6 497 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 ANP32EQ9BTT0 268 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 GHITMQ9H3K2 345 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 KCNH7Q9NS40 1196 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.62□□□□□ -1.67
HMGB1-204ENST00000399489 ARGLU1Q9NWB6 273 aaPredicted RBP4.62□□□□□ -1.67
HMGB1-204ENST00000399489 UCKL1Q9NWZ5 548 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 USP36Q9P275 1121 aaKnown RBP4.62□□□□□ -1.67
HMGB1-204ENST00000399489 KIF17Q9P2E2 1029 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 MSRAQ9UJ68 235 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 VPS28Q9UK41 221 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 CDC42EP3Q9UKI2 254 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 ASB1Q9Y576 335 aa4.62□□□□□ -1.67
HMGB1-204ENST00000399489 GOLGA6L6A8MZA4 724 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 SCDO00767 359 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 FOXP2O15409 715 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 SGPL1O95470 568 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 HSPA4LO95757 839 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 CLEC2LP0C7M8 214 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 MC4RP32245 332 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms