RNA–Protein interactions for RNA: ENST00000397149.3

SMU1-201, Transcript of SMU1, DNA replication regulator and spliceosomal factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMU1, Length 7,122 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMU1-201ENST00000397149 SH2D3AQ9BRG2 576 aa12.84□□□□□ -0.35
SMU1-201ENST00000397149 INTS2Q9H0H0 1204 aaKnown RBP12.84□□□□□ -0.35
SMU1-201ENST00000397149 RAD21L1Q9H4I0 556 aa12.84□□□□□ -0.35
SMU1-201ENST00000397149 AGAP1Q9UPQ3 857 aa12.84□□□□□ -0.35
SMU1-201ENST00000397149 USP17L15C9J2P7 530 aa12.83□□□□□ -0.35
SMU1-201ENST00000397149 USP17L13C9JLJ4 530 aa12.83□□□□□ -0.35
SMU1-201ENST00000397149 USP17L11C9JVI0 530 aa12.83□□□□□ -0.35
SMU1-201ENST00000397149 USP17L18D6R9N7 530 aa12.83□□□□□ -0.35
SMU1-201ENST00000397149 USP17L22D6RA61 530 aa12.83□□□□□ -0.35
SMU1-201ENST00000397149 USP17L17D6RBQ6 530 aa12.83□□□□□ -0.35
SMU1-201ENST00000397149 USP17L19D6RCP7 530 aa12.83□□□□□ -0.35
SMU1-201ENST00000397149 USP17L20D6RJB6 530 aa12.83□□□□□ -0.35
SMU1-201ENST00000397149 TRAPPC3O43617 180 aa12.83□□□□□ -0.35
SMU1-201ENST00000397149 ZNF862O60290 1169 aa12.83□□□□□ -0.35
SMU1-201ENST00000397149 MMP1P03956 469 aa12.83□□□□□ -0.35
SMU1-201ENST00000397149 SERPINB5P36952 375 aa12.83□□□□□ -0.35
SMU1-201ENST00000397149 LRRC63Q05C16 580 aa12.83□□□□□ -0.35
SMU1-201ENST00000397149 USP17L24Q0WX57 530 aa12.83□□□□□ -0.35
SMU1-201ENST00000397149 TRAF2Q12933 501 aa12.83□□□□□ -0.35
SMU1-201ENST00000397149 USP17L6PQ6QN14 398 aa12.83□□□□□ -0.35
SMU1-201ENST00000397149 CCDC33Q8N5R6 958 aa12.83□□□□□ -0.35
SMU1-201ENST00000397149 GIMAP8Q8ND71 665 aaPredicted RBP12.83□□□□□ -0.35
SMU1-201ENST00000397149 EAF2Q96CJ1 260 aaPredicted RBP12.83□□□□□ -0.35
SMU1-201ENST00000397149 MRPL48Q96GC5 212 aaKnown RBP12.83□□□□□ -0.35
SMU1-201ENST00000397149 RIC8BQ9NVN3 520 aa12.83□□□□□ -0.35
SMU1-201ENST00000397149 SNX6Q9UNH7 406 aa12.83□□□□□ -0.35
SMU1-201ENST00000397149 CENPXA8MT69 81 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 MIF4GDA9UHW6 222 aaKnown RBP12.83□□□□□ -0.36
SMU1-201ENST00000397149 B2RBV5 119 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 CDH18Q13634 790 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 FBXO10Q9UK96 956 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 SMAPO00193 183 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 KCNQ3O43525 872 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 PNMA6AP0CW24 399 aaPredicted RBP12.83□□□□□ -0.36
SMU1-201ENST00000397149 ATP1A3P13637 1013 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 MCPH1Q8NEM0 835 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 BLOC1S5Q8TDH9 187 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 TNIP3Q96KP6 325 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 KATNAL1Q9BW62 490 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 MBD2Q9UBB5 411 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 HERC5Q9UII4 1024 aaKnown RBP12.83□□□□□ -0.36
SMU1-201ENST00000397149 RNF112Q9ULX5 631 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 LRG1P02750 347 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 LRRC74BQ6ZQY2 392 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 ATG16L2Q8NAA4 619 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 RNF149Q8NC42 400 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 RSPH1Q8WYR4 309 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 CDC25BP30305 580 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 MTSS1LQ765P7 747 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 GPR141Q7Z602 305 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 PEG10Q86TG7 708 aaKnown RBP12.83□□□□□ -0.36
SMU1-201ENST00000397149 CYP4Z1Q86W10 505 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 VSTM4Q8IW00 320 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 NEK7Q8TDX7 302 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 DNAJC1Q96KC8 554 aaKnown RBP12.83□□□□□ -0.36
SMU1-201ENST00000397149 ZSWIM6Q9HCJ5 1215 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 DLGAP2Q9P1A6 1054 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 AMACRQ9UHK6 382 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 FCER1AP12319 257 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 CDK8P49336 464 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 HARS2P49590 506 aaKnown RBP12.83□□□□□ -0.36
SMU1-201ENST00000397149 ATP1A4Q13733 1029 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 MED8Q96G25 268 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 AHCYL2Q96HN2 611 aaKnown RBP12.83□□□□□ -0.36
SMU1-201ENST00000397149 XPO6Q96QU8 1125 aaKnown RBP12.83□□□□□ -0.36
SMU1-201ENST00000397149 NOL6Q9H6R4 1146 aaKnown RBP12.83□□□□□ -0.36
SMU1-201ENST00000397149 EFR3BQ9Y2G0 817 aa12.83□□□□□ -0.36
SMU1-201ENST00000397149 TNPO2O14787 897 aaKnown RBP12.82□□□□□ -0.36
SMU1-201ENST00000397149 ORC2Q13416 577 aaPredicted RBP12.82□□□□□ -0.36
SMU1-201ENST00000397149 WDR72Q3MJ13 1102 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 HLA-DQA1Q5Y7H0 255 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 RBBP8NLQ8NC74 664 aaPredicted RBP12.82□□□□□ -0.36
SMU1-201ENST00000397149 LRRC39Q96DD0 335 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 KCNK16Q96T55 309 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 HOXC10Q9NYD6 342 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 EIF3LQ9Y262 564 aaKnown RBP12.82□□□□□ -0.36
SMU1-201ENST00000397149 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.82□□□□□ -0.36
SMU1-201ENST00000397149 MGAT4DA6NG13 374 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 CYP26A1O43174 497 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 PMPCBO75439 489 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 GAL3ST3Q96A11 431 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 CLIP3Q96DZ5 547 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 CINPQ9BW66 212 aaPredicted RBP12.82□□□□□ -0.36
SMU1-201ENST00000397149 KIAA1586Q9HCI6 787 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.82□□□□□ -0.368e-7■■■■□ 19.4
SMU1-201ENST00000397149 POTECB2RU33 542 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 PLEKHA8P1O95397 391 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 CNPP09543 421 aaKnown RBP12.82□□□□□ -0.36
SMU1-201ENST00000397149 PIK3R1P27986 724 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 MAPK10P53779 464 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 ARID5BQ14865 1188 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 CDK20Q8IZL9 346 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 WBP11Q9Y2W2 641 aaKnown RBP12.82□□□□□ -0.36
SMU1-201ENST00000397149 EFCAB5A4FU69 1503 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 FGRP09769 529 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 LGALS3BPQ08380 585 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 NLRP10Q86W26 655 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 ZNF560Q96MR9 790 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 OSBPL9Q96SU4 736 aa12.82□□□□□ -0.36
SMU1-201ENST00000397149 CEP72Q9P209 647 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms