RNA–Protein interactions for RNA: ENST00000396548.5

TRIM39-204, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TRIM39, Length 3,198 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-204ENST00000396548 OSTM1Q86WC4 334 aa13.52□□□□□ -0.24
TRIM39-204ENST00000396548 NT5C1AQ9BXI3 368 aa13.52□□□□□ -0.24
TRIM39-204ENST00000396548 ATMINO43313 823 aaPredicted RBP13.52□□□□□ -0.25
TRIM39-204ENST00000396548 HCRTO43612 131 aa13.52□□□□□ -0.25
TRIM39-204ENST00000396548 MYBL1P10243 752 aa13.52□□□□□ -0.25
TRIM39-204ENST00000396548 C1QBPQ07021 282 aaKnown RBP13.52□□□□□ -0.25
TRIM39-204ENST00000396548 TUSC3Q13454 348 aa13.52□□□□□ -0.25
TRIM39-204ENST00000396548 PPP1R2P3Q6NXS1 205 aa13.52□□□□□ -0.25
TRIM39-204ENST00000396548 LCLAT1Q6UWP7 414 aa13.52□□□□□ -0.25
TRIM39-204ENST00000396548 MYRIPQ8NFW9 859 aa13.52□□□□□ -0.25
TRIM39-204ENST00000396548 SEPT8Q92599 483 aa13.52□□□□□ -0.25
TRIM39-204ENST00000396548 PAWRQ96IZ0 340 aaKnown RBP13.52□□□□□ -0.25
TRIM39-204ENST00000396548 ALS2CR12Q96Q35 445 aa13.52□□□□□ -0.25
TRIM39-204ENST00000396548 DPEP3Q9H4B8 488 aa13.52□□□□□ -0.25
TRIM39-204ENST00000396548 MED7O43513 233 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 CLSTN1O94985 981 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 LMO2P25791 158 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 UROC1Q96N76 676 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 BUB1BO60566 1050 aaPredicted RBP13.51□□□□□ -0.25
TRIM39-204ENST00000396548 URI1O94763 535 aaPredicted RBP13.51□□□□□ -0.25
TRIM39-204ENST00000396548 DDHD2O94830 711 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 MICAL2O94851 1124 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 CYP2C18P33260 490 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 GPD2P43304 727 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 GSCP56915 257 aaPredicted RBP13.51□□□□□ -0.25
TRIM39-204ENST00000396548 TUBB2AQ13885 445 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 PLEKHA7Q6IQ23 1121 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 C12orf29Q8N999 325 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 RNF169Q8NCN4 708 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 APPL2Q8NEU8 664 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 CASD1Q96PB1 797 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 TUBB2BQ9BVA1 445 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 CHORDC1Q9UHD1 332 aaPredicted RBP13.51□□□□□ -0.25
TRIM39-204ENST00000396548 SNX12Q9UMY4 172 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 CASTOR2A6NHX0 329 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 NSFP46459 744 aaKnown RBP13.51□□□□□ -0.25
TRIM39-204ENST00000396548 PPP1R15BQ5SWA1 713 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 ARHGAP17Q68EM7 881 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 C11orf63Q6NUN7 778 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 NT5DC3Q86UY8 548 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 COLGALT2Q8IYK4 626 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 LRRN4CLQ8ND94 238 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 C1orf131Q8NDD1 294 aaKnown RBP13.51□□□□□ -0.25
TRIM39-204ENST00000396548 TRIM11Q96F44 468 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 DDX27Q96GQ7 796 aaKnown RBP13.51□□□□□ -0.25
TRIM39-204ENST00000396548 UVRAGQ9P2Y5 699 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 PUF60Q9UHX1 559 aaKnown RBP13.51□□□□□ -0.25
TRIM39-204ENST00000396548 CDC23Q9UJX2 597 aa13.51□□□□□ -0.25
TRIM39-204ENST00000396548 NLRC5Q86WI3 1866 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 PTPRSQ13332 1948 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 M0QZQ0 153 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 CYB561D2O14569 222 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 NCK2O43639 380 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 RRM1P23921 792 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 ITGB8P26012 769 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 GABRB2P47870 512 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 CCL23P55773 120 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 IFI16Q16666 785 aaKnown RBP13.5□□□□□ -0.25
TRIM39-204ENST00000396548 PPP1R26Q5T8A7 1209 aaPredicted RBP13.5□□□□□ -0.25
TRIM39-204ENST00000396548 KIAA0319Q5VV43 1072 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 LLGL2Q6P1M3 1020 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 ZNF280BQ86YH2 543 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 ZNF653Q96CK0 615 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 HEXIM2Q96MH2 286 aaKnown RBP13.5□□□□□ -0.25
TRIM39-204ENST00000396548 LPIN3Q9BQK8 851 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 CTIFO43310 598 aaKnown RBP13.5□□□□□ -0.25
TRIM39-204ENST00000396548 CYP11A1P05108 521 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 CLTBP09497 229 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 PAX3P23760 479 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 GNL1P36915 607 aaPredicted RBP13.5□□□□□ -0.25
TRIM39-204ENST00000396548 TIGD5Q53EQ6 642 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 SGO2Q562F6 1265 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 NOMO2Q5JPE7 1267 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 ACOT1Q86TX2 421 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 ADGRF2Q8IZF7 708 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 TMEM35BQ8NCS4 154 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 RABGGTAQ92696 567 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 HES6Q96HZ4 224 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 SENP8Q96LD8 212 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 NUP85Q9BW27 656 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 GOLPH3Q9H4A6 298 aa13.5□□□□□ -0.25
TRIM39-204ENST00000396548 CNOT8Q9UFF9 292 aaKnown RBP13.5□□□□□ -0.25
TRIM39-204ENST00000396548 TRIM43BA6NCK2 446 aa13.49□□□□□ -0.25
TRIM39-204ENST00000396548 RPL34P49207 117 aaKnown RBP13.49□□□□□ -0.25
TRIM39-204ENST00000396548 MAMLD1Q13495 774 aa13.49□□□□□ -0.25
TRIM39-204ENST00000396548 C2CD6Q53TS8 623 aa13.49□□□□□ -0.25
TRIM39-204ENST00000396548 MMS22LQ6ZRQ5 1243 aa13.49□□□□□ -0.25
TRIM39-204ENST00000396548 TRIM43Q96BQ3 446 aaPredicted RBP13.49□□□□□ -0.25
TRIM39-204ENST00000396548 RTP3Q9BQQ7 232 aa13.49□□□□□ -0.25
TRIM39-204ENST00000396548 TBC1D13Q9NVG8 400 aa13.49□□□□□ -0.25
TRIM39-204ENST00000396548 TMEM189-UBE2V1I3L0A0 370 aa13.49□□□□□ -0.25
TRIM39-204ENST00000396548 HUS1O60921 280 aa13.49□□□□□ -0.25
TRIM39-204ENST00000396548 FTCDO95954 541 aa13.49□□□□□ -0.25
TRIM39-204ENST00000396548 RFC2P35250 354 aa13.49□□□□□ -0.25
TRIM39-204ENST00000396548 NOP2P46087 812 aaKnown RBP13.49□□□□□ -0.25
TRIM39-204ENST00000396548 PTPN20Q4JDL3 420 aa13.49□□□□□ -0.25
TRIM39-204ENST00000396548 WSCD1Q658N2 575 aa13.49□□□□□ -0.25
TRIM39-204ENST00000396548 GLB1LQ6UWU2 654 aa13.49□□□□□ -0.25
TRIM39-204ENST00000396548 TTC30AQ86WT1 665 aa13.49□□□□□ -0.25
TRIM39-204ENST00000396548 SPATA18Q8TC71 538 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms