RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 UBP1Q9NZI7 540 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 POLIQ9UNA4 740 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 KHDRBS3O75525 346 aaKnown RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 MAGEA4P43358 317 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 TUFMP49411 452 aaKnown RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 ZBTB38Q8NAP3 1195 aaPredicted RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 SUPT20HQ8NEM7 779 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 METTL8Q9H825 291 aaKnown RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 LRRC4Q9HBW1 653 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 TOP2AP11388 1531 aaKnown RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 MAP3K19Q56UN5 1328 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 MED23Q9ULK4 1368 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 CCDC154A6NI56 674 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 MYL4P12829 197 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 ABL2P42684 1182 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 PTGDRQ13258 359 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 NEDD8Q15843 81 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 KSR2Q6VAB6 950 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 EXOC3L1Q86VI1 746 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 KRT35Q92764 455 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 FRMD6Q96NE9 622 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 YME1L1Q96TA2 773 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 FRMD8Q9BZ67 464 aaPredicted RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 ILKAPQ9H0C8 392 aaPredicted RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 GPCPD1Q9NPB8 672 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 GNPATO15228 680 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 ABL1P00519 1130 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 FDPSP14324 419 aaKnown RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 BROXQ5VW32 411 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 DENND5AQ6IQ26 1287 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 C4orf22Q6V702 233 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 GSPT2Q8IYD1 628 aaKnown RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 MRPL50Q8N5N7 158 aaKnown RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 TRIM62Q9BVG3 475 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 TTYH1Q9H313 450 aaPredicted RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 RMND5AQ9H871 391 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 MED11Q9P086 117 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 TRIM10Q9UDY6 481 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 RGSL1A5PLK6 1076 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 SLC1A1P43005 524 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 RPL5P46777 297 aaKnown RBP9.07□□□□□ -0.96
LIG3-202ENST00000378526 PPP3CCP48454 512 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 PRKG2Q13237 762 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 LRRC31Q6UY01 552 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 MACC1Q6ZN28 852 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 C10orf107Q8IVU9 208 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 ANO3Q9BYT9 981 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 GGT7Q9UJ14 662 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 TLR2O60603 784 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 ANXA6P08133 673 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 PRKAR2AP13861 404 aaKnown RBP9.07□□□□□ -0.96
LIG3-202ENST00000378526 ILF3Q12906 894 aaKnown RBP eCLIP9.07□□□□□ -0.96
LIG3-202ENST00000378526 IZUMO3Q5VZ72 239 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 OR8H3Q8N146 312 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 EPB41L4BQ9H329 900 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 TRPM5Q9NZQ8 1165 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 MOSPD1Q9UJG1 213 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 MAGED2Q9UNF1 606 aaPredicted RBP9.07□□□□□ -0.96
LIG3-202ENST00000378526 CARMIL3Q8ND23 1372 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 TDRD9Q8NDG6 1382 aaKnown RBP9.07□□□□□ -0.96
LIG3-202ENST00000378526 LRRC53A6NM62 1247 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 ATP6V1G1O75348 118 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 PPM1BO75688 479 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 PGK1P00558 417 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 TKTP29401 623 aaKnown RBP9.07□□□□□ -0.96
LIG3-202ENST00000378526 POLGP54098 1239 aaPredicted RBP9.07□□□□□ -0.96
LIG3-202ENST00000378526 IL5RAQ01344 420 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 TFDP1Q14186 410 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 P3H1Q32P28 736 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 PYDC2Q56P42 97 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.07□□□□□ -0.96
LIG3-202ENST00000378526 GDPD5Q8WTR4 605 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 VPS54Q9P1Q0 977 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 SYNJ2BP-COX16A0A087WUM0 186 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 FAM220BPB1ANY3 271 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 FGFR4P22455 802 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 BHLHB9Q6PI77 547 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 C11orf57Q6ZUT1 292 aaPredicted RBP9.07□□□□□ -0.96
LIG3-202ENST00000378526 METTL23Q86XA0 190 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 MEIOBQ8N635 442 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 RNF139Q8WU17 664 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 CYP39A1Q9NYL5 469 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 COX16Q9P0S2 106 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 GIT1Q9Y2X7 761 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 SNAP91O60641 907 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 NTRK1P04629 796 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 STOMP27105 288 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 CAPGP40121 348 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 FAM173BQ6P4H8 233 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 RAB43Q86YS6 212 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 C16orf71Q8IYS4 520 aaPredicted RBP9.07□□□□□ -0.96
LIG3-202ENST00000378526 TSPAN14Q8NG11 270 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 OR8H1Q8NGG4 311 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 STK32AQ8WU08 396 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 ELMO2Q96JJ3 720 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 CCSER1Q9C0I3 900 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 PSTPIP2Q9H939 334 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 GPAMQ9HCL2 828 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 ABCB10Q9NRK6 738 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 KDM5AP29375 1690 aaKnown RBP9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms