RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 FAM46DQ8NEK8 389 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 FKBP10Q96AY3 582 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 GTPBP4Q9BZE4 634 aaKnown RBP2.88□□□□□ -1.95
VPS13A-206ENST00000376646 TTYH3Q9C0H2 523 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 MRPL46Q9H2W6 279 aaKnown RBP2.88□□□□□ -1.95
VPS13A-206ENST00000376646 TMX1Q9H3N1 280 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 MAN1C1Q9NR34 630 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 SIDT1Q9NXL6 827 aaKnown RBP2.88□□□□□ -1.95
VPS13A-206ENST00000376646 CFAP97Q9P2B7 532 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 LUC7L2Q9Y383 392 aaKnown RBP2.88□□□□□ -1.95
VPS13A-206ENST00000376646 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 ALG1L2C9J202 215 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 URI1O94763 535 aaPredicted RBP2.88□□□□□ -1.95
VPS13A-206ENST00000376646 ANXA1P04083 346 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 NHLRC4P0CG21 123 aaPredicted RBP2.88□□□□□ -1.95
VPS13A-206ENST00000376646 HDCP19113 662 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 CYP2C19P33261 490 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 CLCN2P51788 898 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 IGBP1P78318 339 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 ZNF782Q6ZMW2 699 aaPredicted RBP2.88□□□□□ -1.95
VPS13A-206ENST00000376646 USP45Q70EL2 814 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 USP37Q86T82 979 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 PRR18Q8N4B5 295 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 ZCRB1Q8TBF4 217 aaKnown RBP2.88□□□□□ -1.95
VPS13A-206ENST00000376646 CNPPD1Q9BV87 410 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 SLC29A3Q9BZD2 475 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 GPR35Q9HC97 309 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 SERGEFQ9UGK8 458 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 NOP58Q9Y2X3 529 aaKnown RBP2.88□□□□□ -1.95
VPS13A-206ENST00000376646 WDR91A4D1P6 747 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 CCDC151A5D8V7 595 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 E7ENX8 843 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 PROP1O75360 226 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 SNUPNO95149 360 aaKnown RBP2.87□□□□□ -1.95
VPS13A-206ENST00000376646 IL33O95760 270 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 TTLL1O95922 423 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 RPLP2P05387 115 aaKnown RBP2.87□□□□□ -1.95
VPS13A-206ENST00000376646 ZFXP17010 805 aaPredicted RBP2.87□□□□□ -1.95
VPS13A-206ENST00000376646 WT1P19544 449 aaPredicted RBP2.87□□□□□ -1.95
VPS13A-206ENST00000376646 ITGALP20701 1170 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 DRD4P21917 467 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 CD6P30203 668 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 RECQLP46063 649 aaPredicted RBP2.87□□□□□ -1.95
VPS13A-206ENST00000376646 GCLCP48506 637 aaPredicted RBP2.87□□□□□ -1.95
VPS13A-206ENST00000376646 CCT8P50990 548 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 HK3P52790 923 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 NXPH1P58417 271 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 ANAPC15P60006 121 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 TFF2Q03403 129 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 TAP2Q03519 686 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 PAPD7Q5XG87 772 aaKnown RBP2.87□□□□□ -1.95
VPS13A-206ENST00000376646 TMEM108Q6UXF1 575 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 MAVSQ7Z434 540 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 PPP1R32Q7Z5V6 425 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 KLHDC4Q8TBB5 520 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 PBKQ96KB5 322 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 ZNF778Q96MU6 729 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 ST6GALNAC1Q9NSC7 600 aaPredicted RBP2.87□□□□□ -1.95
VPS13A-206ENST00000376646 LMBRD1Q9NUN5 540 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 RAD54BQ9Y620 910 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 WNT6Q9Y6F9 365 aa2.87□□□□□ -1.95
VPS13A-206ENST00000376646 H3BUI4 141 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 INO80B-WBP1J3KQ70 363 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 DCLK1O15075 740 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 TRIAP1O43715 76 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 ORC4O43929 436 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 HNRNPCP07910 306 aaKnown RBP eCLIP2.86□□□□□ -1.95
VPS13A-206ENST00000376646 POU2F2P09086 479 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 CDK4P11802 303 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 LIPAP38571 399 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 PLS1Q14651 629 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 FCRLBQ6BAA4 426 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 CPA6Q8N4T0 437 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 FAM136AQ96C01 138 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 SLC46A1Q96NT5 459 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 KRTAP4-3Q9BYR4 195 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 INO80BQ9C086 356 aaPredicted RBP2.86□□□□□ -1.95
VPS13A-206ENST00000376646 ARMT1Q9H993 441 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 GNL3LQ9NVN8 582 aaKnown RBP2.86□□□□□ -1.95
VPS13A-206ENST00000376646 FEZ2Q9UHY8 353 aaPredicted RBP2.86□□□□□ -1.95
VPS13A-206ENST00000376646 PADI4Q9UM07 663 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 PCDHA6Q9UN73 950 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 DNAJB5O75953 348 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 ALDH2P05091 517 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 TYRP14679 529 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 ZNF267Q14586 743 aaPredicted RBP2.86□□□□□ -1.95
VPS13A-206ENST00000376646 PGS1Q32NB8 556 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 FAM153CQ494X1 144 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 CCDC157Q569K6 752 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 SPATA31A3Q5VYP0 1347 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 HASPINQ8TF76 798 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 HSPBAP1Q96EW2 488 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 MACROD1Q9BQ69 325 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 SH2D3AQ9BRG2 576 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 RLIMQ9NVW2 624 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 STAP2Q9UGK3 403 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 IP6K2Q9UHH9 426 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 SERTAD3Q9UJW9 196 aa2.86□□□□□ -1.95
VPS13A-206ENST00000376646 SETD1BQ9UPS6 1966 aaKnown RBP2.86□□□□□ -1.95
VPS13A-206ENST00000376646 POLHQ9Y253 713 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms