RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 GPD1P21695 349 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 RAP1GAPP47736 663 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 RPS7P62081 194 aaKnown RBP14.28□□□□□ -0.12
COL4A1-201ENST00000375820 COG2Q14746 738 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 JAMLQ86YT9 394 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 TRIM48Q8IWZ4 208 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 MANSC1Q9H8J5 431 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 POLBP06746 335 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 C12orf60Q5U649 245 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 KCNT1Q5JUK3 1230 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 USP49Q70CQ1 688 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 HEATR4Q86WZ0 1026 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 CATSPER1Q8NEC5 780 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 CINPQ9BW66 212 aaPredicted RBP14.28□□□□□ -0.12
COL4A1-201ENST00000375820 M0R3G1 203 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 NPEPPSP55786 919 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 DPYDQ12882 1025 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 PIGHQ14442 188 aaPredicted RBP14.28□□□□□ -0.12
COL4A1-201ENST00000375820 PRPF18Q99633 342 aaKnown RBP14.28□□□□□ -0.12
COL4A1-201ENST00000375820 NT5C1AQ9BXI3 368 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 OSBPL8Q9BZF1 889 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 PTCH1Q13635 1447 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 A0A1W2PQC6 194 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 HEATR9A2RTY3 570 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 HARS2P49590 506 aaKnown RBP14.28□□□□□ -0.12
COL4A1-201ENST00000375820 RUNX1T1Q06455 604 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 DNAJC3Q13217 504 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 TRADDQ15628 312 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 ELMO3Q96BJ8 720 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 ZIM3Q96PE6 472 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 SMARCAD1Q9H4L7 1026 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 DAGLAQ9Y4D2 1042 aa14.28□□□□□ -0.12
COL4A1-201ENST00000375820 SYNMO15061 1565 aa14.27□□□□□ -0.12
COL4A1-201ENST00000375820 IGF2BP3O00425 579 aaKnown RBP eCLIP14.27□□□□□ -0.12
COL4A1-201ENST00000375820 TRIP4Q15650 581 aaPredicted RBP14.27□□□□□ -0.12
COL4A1-201ENST00000375820 CLEC16AQ2KHT3 1053 aa14.27□□□□□ -0.12
COL4A1-201ENST00000375820 NSUN4Q96CB9 384 aaKnown RBP14.27□□□□□ -0.12
COL4A1-201ENST00000375820 ECSITQ9BQ95 431 aa14.27□□□□□ -0.12
COL4A1-201ENST00000375820 ZDHHC9Q9Y397 364 aa14.27□□□□□ -0.12
COL4A1-201ENST00000375820 SERPINB3P29508 390 aa14.27□□□□□ -0.12
COL4A1-201ENST00000375820 CHI3L1P36222 383 aaPredicted RBP14.27□□□□□ -0.12
COL4A1-201ENST00000375820 MICU2Q8IYU8 434 aa14.27□□□□□ -0.12
COL4A1-201ENST00000375820 STKLD1Q8NE28 680 aa14.27□□□□□ -0.12
COL4A1-201ENST00000375820 ATG4AQ8WYN0 398 aa14.27□□□□□ -0.12
COL4A1-201ENST00000375820 GPATCH2LQ9NWQ4 482 aa14.27□□□□□ -0.12
COL4A1-201ENST00000375820 MTMR4Q9NYA4 1195 aa14.27□□□□□ -0.12
COL4A1-201ENST00000375820 SMG5Q9UPR3 1016 aaKnown RBP14.27□□□□□ -0.12
COL4A1-201ENST00000375820 SLC16A3O15427 465 aaKnown RBP14.27□□□□□ -0.13
COL4A1-201ENST00000375820 DLGAP3O95886 979 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 CCDC15Q0P6D6 951 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 XKR3Q5GH77 459 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 BRINP3Q76B58 766 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 ZNF786Q8N393 782 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 XPO6Q96QU8 1125 aaKnown RBP14.27□□□□□ -0.13
COL4A1-201ENST00000375820 RHBDL2Q9NX52 303 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 ITIH6Q6UXX5 1313 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 F8W810 466 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 GH1P01241 217 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 RALBP11234 206 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 CDH2P19022 906 aaPredicted RBP14.27□□□□□ -0.13
COL4A1-201ENST00000375820 ITIH2P19823 946 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 ALDH1A3P47895 512 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 SERPINB4P48594 390 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 CDH18Q13634 790 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 P3H2Q8IVL5 708 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 PCYOX1LQ8NBM8 494 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 NEDD1Q8NHV4 660 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 MTERF3Q96E29 417 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 FAM111AQ96PZ2 611 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 TMEM39BQ9GZU3 492 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 POU1F1P28069 291 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 MIB1Q86YT6 1006 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 TTC39CQ8N584 583 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 CENPTQ96BT3 561 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 APOL2Q9BQE5 337 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 SLC25A13Q9UJS0 675 aa14.27□□□□□ -0.13
COL4A1-201ENST00000375820 DGAT1O75907 488 aa14.26□□□□□ -0.13
COL4A1-201ENST00000375820 PLEKP08567 350 aaPredicted RBP14.26□□□□□ -0.13
COL4A1-201ENST00000375820 DARSP14868 501 aaKnown RBP14.26□□□□□ -0.13
COL4A1-201ENST00000375820 SPRP35270 261 aaPredicted RBP14.26□□□□□ -0.13
COL4A1-201ENST00000375820 IER5Q5VY09 327 aa14.26□□□□□ -0.13
COL4A1-201ENST00000375820 E4F1Q66K89 784 aaPredicted RBP14.26□□□□□ -0.13
COL4A1-201ENST00000375820 BARGINQ6ZT62 677 aa14.26□□□□□ -0.13
COL4A1-201ENST00000375820 SPATA16Q9BXB7 569 aa14.26□□□□□ -0.13
COL4A1-201ENST00000375820 CATSPERBQ9H7T0 1116 aa14.26□□□□□ -0.13
COL4A1-201ENST00000375820 RUVBL2Q9Y230 463 aaKnown RBP14.26□□□□□ -0.13
COL4A1-201ENST00000375820 ADGBQ8N7X0 1667 aa14.26□□□□□ -0.13
COL4A1-201ENST00000375820 CPSF4O95639 269 aaKnown RBP14.26□□□□□ -0.13
COL4A1-201ENST00000375820 SRGNP10124 158 aa14.26□□□□□ -0.13
COL4A1-201ENST00000375820 PTGER2P43116 358 aa14.26□□□□□ -0.13
COL4A1-201ENST00000375820 CASP4P49662 377 aa14.26□□□□□ -0.13
COL4A1-201ENST00000375820 TRPM8Q7Z2W7 1104 aa14.26□□□□□ -0.13
COL4A1-201ENST00000375820 CCDC103Q8IW40 242 aa14.26□□□□□ -0.13
COL4A1-201ENST00000375820 HPDLQ96IR7 371 aa14.26□□□□□ -0.13
COL4A1-201ENST00000375820 CPB2Q96IY4 423 aa14.26□□□□□ -0.13
COL4A1-201ENST00000375820 PHF20Q9BVI0 1012 aa14.26□□□□□ -0.13
COL4A1-201ENST00000375820 PRR12Q9ULL5 1215 aa14.26□□□□□ -0.13
COL4A1-201ENST00000375820 C16orf96A6NNT2 1141 aa14.26□□□□□ -0.13
COL4A1-201ENST00000375820 M0QYT0 321 aa14.26□□□□□ -0.13
COL4A1-201ENST00000375820 ALOX15P16050 662 aaPredicted RBP14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms