RNA–Protein interactions for RNA: ENST00000374943.8

HLA-DQB1-201, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-201ENST00000374943 TRIM6Q9C030 488 aaPredicted RBP19.08■□□□□ 0.64
HLA-DQB1-201ENST00000374943 ARHGAP39Q9C0H5 1083 aa19.08■□□□□ 0.64
HLA-DQB1-201ENST00000374943 NXF3Q9H4D5 531 aaKnown RBP19.08■□□□□ 0.64
HLA-DQB1-201ENST00000374943 PLEKHA4Q9H4M7 779 aa19.08■□□□□ 0.64
HLA-DQB1-201ENST00000374943 FAM114A2Q9NRY5 505 aa19.08■□□□□ 0.64
HLA-DQB1-201ENST00000374943 GABRQQ9UN88 632 aa19.08■□□□□ 0.64
HLA-DQB1-201ENST00000374943 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.08■□□□□ 0.64
HLA-DQB1-201ENST00000374943 UTP11Q9Y3A2 253 aaKnown RBP19.08■□□□□ 0.64
HLA-DQB1-201ENST00000374943 HMGCRP04035 888 aa19.07■□□□□ 0.64
HLA-DQB1-201ENST00000374943 CNGA2Q16280 664 aa19.07■□□□□ 0.64
HLA-DQB1-201ENST00000374943 PTPN20Q4JDL3 420 aa19.07■□□□□ 0.64
HLA-DQB1-201ENST00000374943 ADAT2Q7Z6V5 191 aaKnown RBP19.07■□□□□ 0.64
HLA-DQB1-201ENST00000374943 NIPA2Q8N8Q9 360 aa19.07■□□□□ 0.64
HLA-DQB1-201ENST00000374943 FAM71BQ8TC56 605 aa19.07■□□□□ 0.64
HLA-DQB1-201ENST00000374943 CELF4Q9BZC1 486 aaKnown RBP19.07■□□□□ 0.64
HLA-DQB1-201ENST00000374943 CXCL16Q9H2A7 254 aa19.07■□□□□ 0.64
HLA-DQB1-201ENST00000374943 WDR35Q9P2L0 1181 aa19.07■□□□□ 0.64
HLA-DQB1-201ENST00000374943 GTF2IRD1Q9UHL9 959 aa19.07■□□□□ 0.64
HLA-DQB1-201ENST00000374943 UBQLN1Q9UMX0 589 aaKnown RBP19.07■□□□□ 0.64
HLA-DQB1-201ENST00000374943 O00370 1275 aa19.06■□□□□ 0.64
HLA-DQB1-201ENST00000374943 SEPT4O43236 478 aa19.06■□□□□ 0.64
HLA-DQB1-201ENST00000374943 KCNE1P15382 129 aa19.06■□□□□ 0.64
HLA-DQB1-201ENST00000374943 FNTAP49354 379 aa19.06■□□□□ 0.64
HLA-DQB1-201ENST00000374943 FLT3LGP49771 235 aa19.06■□□□□ 0.64
HLA-DQB1-201ENST00000374943 RPL7AP62424 266 aaKnown RBP19.06■□□□□ 0.64
HLA-DQB1-201ENST00000374943 TRADDQ15628 312 aa19.06■□□□□ 0.64
HLA-DQB1-201ENST00000374943 GNASQ5JWF2 1037 aa19.06■□□□□ 0.64
HLA-DQB1-201ENST00000374943 SPC25Q9HBM1 224 aa19.06■□□□□ 0.64
HLA-DQB1-201ENST00000374943 CYTH4Q9UIA0 394 aa19.06■□□□□ 0.64
HLA-DQB1-201ENST00000374943 RASAL2Q9UJF2 1139 aa19.06■□□□□ 0.64
HLA-DQB1-201ENST00000374943 MICAL2O94851 1124 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 FAM153BP0C7A2 387 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 RARAP10276 462 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 PTGIRP43119 386 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 NDST1P52848 882 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 DRG2P55039 364 aaKnown RBP19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 TAS2R40P59535 323 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 FAM193AP78312 1265 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 MRPS6P82932 125 aaKnown RBP19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 ZNF252P-AS1Q0IIN9 211 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 STILQ15468 1287 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 FAM153CQ494X1 144 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 SGO2Q562F6 1265 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 HSP90B2PQ58FF3 399 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 LRRC38Q5VT99 294 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 ALS2CLQ60I27 953 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 JAMLQ86YT9 394 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 MAGOHBQ96A72 148 aaKnown RBP19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 MCEEQ96PE7 176 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 NT5C1AQ9BXI3 368 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 LRRC19Q9H756 370 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 TUBGCP4Q9UGJ1 667 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 FAM153AQ9UHL3 310 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 HES2Q9Y543 173 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 THSD7BQ9C0I4 1608 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 TCRBV7S2A1N4TA0A589 114 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 XPOTO43592 962 aaKnown RBP19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 GJB6O95452 261 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 CD4P01730 458 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 RPLP2P05387 115 aaKnown RBP19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 GABRB2P47870 512 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 PIGHQ14442 188 aaPredicted RBP19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 DUPD1Q68J44 220 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 DCUN1D2Q6PH85 259 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 TSEN2Q8NCE0 465 aaKnown RBP19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 EXD1Q8NHP7 514 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 FNIP1Q8TF40 1166 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 SLCO2A1Q92959 643 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 ERP44Q9BS26 406 aa19.05■□□□□ 0.64
HLA-DQB1-201ENST00000374943 GOLGA6BA6NDN3 693 aa19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 SIGLEC16A6NMB1 481 aa19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 AGPSO00116 658 aa19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 ADAMTS4O75173 837 aa19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 RARBP10826 455 aa19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 ATF7P17544 494 aaPredicted RBP19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 COILP38432 576 aaPredicted RBP19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 HSPA9P38646 679 aaKnown RBP19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 ORC1Q13415 861 aa19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 HLTFQ14527 1009 aaKnown RBP eCLIP19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 ZNF268Q14587 947 aaPredicted RBP19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 C9orf57Q5W0N0 161 aa19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 TTC27Q6P3X3 843 aa19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 CCDC137Q6PK04 289 aaKnown RBP19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 LCLAT1Q6UWP7 414 aa19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 RPAINQ86UA6 219 aa19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 FAM228AQ86W67 206 aa19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 C18orf25Q96B23 403 aaPredicted RBP19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 C18orf8Q96DM3 657 aa19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 TRIM51Q9BSJ1 452 aa19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 TRPV2Q9Y5S1 764 aa19.04■□□□□ 0.64
HLA-DQB1-201ENST00000374943 SMIM28A0A1B0GU29 152 aa19.03■□□□□ 0.64
HLA-DQB1-201ENST00000374943 M0QYV0 167 aa19.03■□□□□ 0.64
HLA-DQB1-201ENST00000374943 PODXLO00592 558 aa19.03■□□□□ 0.64
HLA-DQB1-201ENST00000374943 PIRO00625 290 aa19.03■□□□□ 0.64
HLA-DQB1-201ENST00000374943 PPEF2O14830 753 aa19.03■□□□□ 0.64
HLA-DQB1-201ENST00000374943 DAPK3O43293 454 aa19.03■□□□□ 0.64
HLA-DQB1-201ENST00000374943 SYF2O95926 243 aaKnown RBP19.03■□□□□ 0.64
HLA-DQB1-201ENST00000374943 CYP3A5P20815 502 aa19.03■□□□□ 0.64
HLA-DQB1-201ENST00000374943 GBP1P32455 592 aa19.03■□□□□ 0.64
HLA-DQB1-201ENST00000374943 GPD2P43304 727 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms