RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 TSPY1Q01534 308 aa23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 GRM2Q14416 872 aa23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 ANGPT1Q15389 498 aa23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 VITQ6UXI7 678 aa23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 GAREM2Q75VX8 874 aa23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 WDR49Q8IV35 697 aa23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 GRAMD1CQ8IYS0 662 aa23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 TOP6BLQ8N6T0 577 aa23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 SPATA18Q8TC71 538 aa23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 LEO1Q8WVC0 666 aaPredicted RBP23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 DNASE1L2Q92874 299 aa23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 LPIN3Q9BQK8 851 aa23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 ACBD6Q9BR61 282 aa23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 TRMT61BQ9BVS5 477 aaKnown RBP23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 SLC39A2Q9NP94 309 aa23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 SNX9Q9Y5X1 595 aa23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 COL4A3Q01955 1670 aa23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 CLIC2O15247 247 aa23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 TNNC2P02585 160 aa23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 PSMC3P17980 439 aa23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 CMA1P23946 247 aa23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 VIPR2P41587 438 aa23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 KRT85P78386 507 aa23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 VEPH1Q14D04 833 aa23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 SNRNP35Q16560 246 aaKnown RBP23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 DUOXA2Q1HG44 320 aa23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 HS2ST1Q7LGA3 356 aa23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 FAM200AQ8TCP9 573 aa23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 DEPDC1BQ8WUY9 529 aa23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 PAGE5Q96GU1 130 aa23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 OSBPL6Q9BZF3 934 aa23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 SLITRK6Q9H5Y7 841 aa23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 BRD9Q9H8M2 597 aa23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 TMLHEQ9NVH6 421 aa23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 DDX43Q9NXZ2 648 aaKnown RBP23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 ABI2Q9NYB9 513 aaPredicted RBP23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 CGNQ9P2M7 1197 aaKnown RBP23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 PCDHB5Q9Y5E4 795 aa23.33■■□□□ 1.33
CCDC28B-201ENST00000373602 KLRC4O43908 158 aa23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 GLULP15104 373 aa23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 PFKFB1P16118 471 aa23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 GABRR2P28476 465 aa23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 MYL7Q01449 175 aa23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 MYO1EQ12965 1108 aa23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 NFE2Q16621 373 aaPredicted RBP23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 OSTM1Q86WC4 334 aa23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 C12orf56Q8IXR9 622 aa23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 XXYLT1Q8NBI6 393 aa23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 RDH13Q8NBN7 331 aa23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 IRF7Q92985 503 aa23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 E2F7Q96AV8 911 aa23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 CHAMP1Q96JM3 812 aa23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 SPATA32Q96LK8 384 aa23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 MKNK1Q9BUB5 465 aa23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 ATXN3LQ9H3M9 355 aa23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 LTB4R2Q9NPC1 389 aa23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 HEBP1Q9NRV9 189 aa23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 USP25Q9UHP3 1055 aa23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 R3HCC1Q9Y3T6 440 aaKnown RBP23.32■■□□□ 1.32
CCDC28B-201ENST00000373602 A0A1B0GVL5 298 aa23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 GABRDO14764 452 aa23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 LRRN2O75325 713 aa23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 LHX1P48742 406 aa23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 CYP2J2P51589 502 aa23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 CYP24A1Q07973 514 aa23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 KNOP1Q1ED39 458 aaKnown RBP23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 INTS6LQ5JSJ4 861 aaKnown RBP23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 STXBP5Q5T5C0 1151 aa23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 TPRG1Q6ZUI0 275 aa23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 DPH6Q7L8W6 267 aa23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 LIMS2Q7Z4I7 341 aa23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 MFSD6LQ8IWD5 586 aa23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 HPDLQ96IR7 371 aa23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 PKMYT1Q99640 499 aa23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 IL21Q9HBE4 155 aa23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 TRPV5Q9NQA5 729 aa23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 HPSEQ9Y251 543 aa23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 MTF2Q9Y483 593 aaPredicted RBP23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 NCANO14594 1321 aa23.31■■□□□ 1.32
CCDC28B-201ENST00000373602 HEPACAM2A8MVW5 462 aa23.3■■□□□ 1.32
CCDC28B-201ENST00000373602 CD72P21854 359 aa23.3■■□□□ 1.32
CCDC28B-201ENST00000373602 ACAT1P24752 427 aaKnown RBP23.3■■□□□ 1.32
CCDC28B-201ENST00000373602 GDI1P31150 447 aa23.3■■□□□ 1.32
CCDC28B-201ENST00000373602 UBXN2BQ14CS0 331 aa23.3■■□□□ 1.32
CCDC28B-201ENST00000373602 PSMD6Q15008 389 aa23.3■■□□□ 1.32
CCDC28B-201ENST00000373602 SOWAHAQ2M3V2 549 aa23.3■■□□□ 1.32
CCDC28B-201ENST00000373602 ARHGAP15Q53QZ3 475 aa23.3■■□□□ 1.32
CCDC28B-201ENST00000373602 TRAPPC11Q7Z392 1133 aa23.3■■□□□ 1.32
CCDC28B-201ENST00000373602 ADGRF2Q8IZF7 708 aa23.3■■□□□ 1.32
CCDC28B-201ENST00000373602 GIPC2Q8TF65 315 aa23.3■■□□□ 1.32
CCDC28B-201ENST00000373602 RSPRY1Q96DX4 576 aa23.3■■□□□ 1.32
CCDC28B-201ENST00000373602 NELL2Q99435 816 aa23.3■■□□□ 1.32
CCDC28B-201ENST00000373602 CGRRF1Q99675 332 aa23.3■■□□□ 1.32
CCDC28B-201ENST00000373602 SHISA7A6NL88 538 aa23.29■■□□□ 1.32
CCDC28B-201ENST00000373602 FAM170BA6NMN3 283 aa23.29■■□□□ 1.32
CCDC28B-201ENST00000373602 GFRA3O60609 400 aa23.29■■□□□ 1.32
CCDC28B-201ENST00000373602 PRPF40AO75400 957 aaKnown RBP23.29■■□□□ 1.32
CCDC28B-201ENST00000373602 DLATP10515 647 aaKnown RBP23.29■■□□□ 1.32
CCDC28B-201ENST00000373602 CDC25CP30307 473 aa23.29■■□□□ 1.32
CCDC28B-201ENST00000373602 STK4Q13043 487 aa23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms