RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 SLC27A3Q5K4L6 730 aa17.26■□□□□ 0.35
SDC4-201ENST00000372733 ANKRD22Q5VYY1 191 aa17.26■□□□□ 0.35
SDC4-201ENST00000372733 ZNF483Q8TF39 744 aaPredicted RBP17.26■□□□□ 0.35
SDC4-201ENST00000372733 MCEEQ96PE7 176 aa17.26■□□□□ 0.35
SDC4-201ENST00000372733 PARVAQ9NVD7 372 aa17.26■□□□□ 0.35
SDC4-201ENST00000372733 IP6K2Q9UHH9 426 aa17.26■□□□□ 0.35
SDC4-201ENST00000372733 TELO2Q9Y4R8 837 aa17.26■□□□□ 0.35
SDC4-201ENST00000372733 C4BPAP04003 597 aaKnown RBP17.26■□□□□ 0.35
SDC4-201ENST00000372733 MMP10P09238 476 aa17.26■□□□□ 0.35
SDC4-201ENST00000372733 RPS6P62753 249 aaKnown RBP17.26■□□□□ 0.35
SDC4-201ENST00000372733 C1QBPQ07021 282 aaKnown RBP17.26■□□□□ 0.35
SDC4-201ENST00000372733 DGKZQ13574 1117 aa17.26■□□□□ 0.35
SDC4-201ENST00000372733 HIF1AQ16665 826 aa17.26■□□□□ 0.35
SDC4-201ENST00000372733 DRICH1Q6PGQ1 229 aaPredicted RBP17.26■□□□□ 0.35
SDC4-201ENST00000372733 NTPCRQ9BSD7 190 aaKnown RBP17.26■□□□□ 0.35
SDC4-201ENST00000372733 SLC17A7Q9P2U7 560 aa17.26■□□□□ 0.35
SDC4-201ENST00000372733 RABGEF1Q9UJ41 708 aa17.26■□□□□ 0.35
SDC4-201ENST00000372733 hCG_1818297A0A087WSY0 165 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 LRRD1A4D1F6 860 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 CLGNO14967 610 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 MARK3P27448 753 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 CTCFP49711 727 aaPredicted RBP17.25■□□□□ 0.35
SDC4-201ENST00000372733 GEMIN4P57678 1058 aaKnown RBP17.25■□□□□ 0.35
SDC4-201ENST00000372733 SATB1Q01826 763 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 OGDHQ02218 1023 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 MSS51Q4VC12 460 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 SCARA3Q6AZY7 606 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 TEX9Q8N6V9 391 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 PTPRN2Q92932 1015 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 PRR11Q96HE9 360 aaPredicted RBP17.25■□□□□ 0.35
SDC4-201ENST00000372733 GJD4Q96KN9 370 aaPredicted RBP17.25■□□□□ 0.35
SDC4-201ENST00000372733 WDR83Q9BRX9 315 aaKnown RBP17.25■□□□□ 0.35
SDC4-201ENST00000372733 TLE6Q9H808 572 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 XPNPEP1Q9NQW7 623 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 SAE1Q9UBE0 346 aaPredicted RBP17.25■□□□□ 0.35
SDC4-201ENST00000372733 GABBR1Q9UBS5 961 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 CNTNAP1P78357 1384 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 A0A0G2JND7 137 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 SPDYE2BA6NHP3 402 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 YDJCA8MPS7 323 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 EXTL3O43909 919 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 ZWINTO95229 277 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 SPDYE6P0CI01 402 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 TROVE2P10155 538 aaKnown RBP eCLIP17.25■□□□□ 0.353e-7■■□□□ 12.6
SDC4-201ENST00000372733 ATP4AP20648 1035 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 LIG4P49917 911 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 KRT76Q01546 638 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 SP4Q02446 784 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 PSMD6Q15008 389 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 KHDC1Q4VXA5 237 aaKnown RBP17.25■□□□□ 0.35
SDC4-201ENST00000372733 DSTYKQ6XUX3 929 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 SEPT12Q8IYM1 358 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 TCP10LQ8TDR4 215 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 VCPIP1Q96JH7 1222 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 PAFAH2Q99487 392 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 CADM1Q9BY67 442 aaKnown RBP17.25■□□□□ 0.35
SDC4-201ENST00000372733 TMEM39BQ9GZU3 492 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 PCDH9Q9HC56 1237 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 ARL8BQ9NVJ2 186 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 ANKFY1Q9P2R3 1169 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 LNPEPQ9UIQ6 1025 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 RGPD3A6NKT7 1758 aaPredicted RBP17.25■□□□□ 0.35
SDC4-201ENST00000372733 RGPD4Q7Z3J3 1758 aa17.25■□□□□ 0.35
SDC4-201ENST00000372733 ATP2A1O14983 1001 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 SFNP31947 248 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 DYNLT1P63172 113 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 SEPT7Q16181 437 aaKnown RBP17.24■□□□□ 0.35
SDC4-201ENST00000372733 ZBTB41Q5SVQ8 909 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 FNBP1LQ5T0N5 605 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 C4orf50Q6ZRC1 276 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 APBB1IPQ7Z5R6 666 aaPredicted RBP17.24■□□□□ 0.35
SDC4-201ENST00000372733 MCF2L2Q86YR7 1114 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 LMNTD2Q8IXW0 634 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 ZNF276Q8N554 614 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 DNAJC9Q8WXX5 260 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 ZNF341Q9BYN7 854 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 ZNF70Q9UC06 446 aaPredicted RBP17.24■□□□□ 0.35
SDC4-201ENST00000372733 NUB1Q9Y5A7 615 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 ZNF541Q9H0D2 1346 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 TMEM191CA6NGB0 347 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 SPDYE5A6NIY4 337 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 MAP3K13O43283 966 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 TMEM191BP0C7N4 346 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 FBXO41Q8TF61 875 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 FAM151AQ8WW52 585 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 SAR1AQ9NR31 198 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 NMRK1Q9NWW6 199 aa17.24■□□□□ 0.35
SDC4-201ENST00000372733 CFAP69A5D8W1 941 aa17.23■□□□□ 0.35
SDC4-201ENST00000372733 HAUS5O94927 633 aa17.23■□□□□ 0.35
SDC4-201ENST00000372733 MMP8P22894 467 aa17.23■□□□□ 0.35
SDC4-201ENST00000372733 GDF10P55107 478 aa17.23■□□□□ 0.35
SDC4-201ENST00000372733 CLDN10P78369 228 aa17.23■□□□□ 0.35
SDC4-201ENST00000372733 TSNAXIP1Q2TAA8 658 aa17.23■□□□□ 0.35
SDC4-201ENST00000372733 MUM1Q2TAK8 710 aa17.23■□□□□ 0.35
SDC4-201ENST00000372733 RHPN2Q8IUC4 686 aa17.23■□□□□ 0.35
SDC4-201ENST00000372733 NKD2Q969F2 451 aaPredicted RBP17.23■□□□□ 0.35
SDC4-201ENST00000372733 RMDN3Q96TC7 470 aa17.23■□□□□ 0.35
SDC4-201ENST00000372733 HAPLN2Q9GZV7 340 aa17.23■□□□□ 0.35
SDC4-201ENST00000372733 POLR3FQ9H1D9 316 aaPredicted RBP17.23■□□□□ 0.35
SDC4-201ENST00000372733 FBXO6Q9NRD1 293 aaPredicted RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms