RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ACADSBP45954 432 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 IER5Q5VY09 327 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 RRM2BQ7LG56 351 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 IFNEQ86WN2 208 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 ARID3BQ8IVW6 561 aaPredicted RBP11.94□□□□□ -0.5
PTPRF-203ENST00000372407 NSL1Q96IY1 281 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 PPP1R36Q96LQ0 422 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 NSMCE4AQ9NXX6 385 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 MOSPD1Q9UJG1 213 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 PDGFRBP09619 1106 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 KCNA3P22001 575 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 PON1P27169 355 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 TOB1P50616 345 aaPredicted RBP11.94□□□□□ -0.5
PTPRF-203ENST00000372407 MAP3K10Q02779 954 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 LAMB3Q13751 1172 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 CDKAL1Q5VV42 579 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 C16orf89Q6UX73 402 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 CALML6Q8TD86 181 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 KDM4CQ9H3R0 1056 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 AFF4Q9UHB7 1163 aaKnown RBP11.94□□□□□ -0.5
PTPRF-203ENST00000372407 CD4P01730 458 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 APOA1P02647 267 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 MYL2P10916 166 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 GPD1P21695 349 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 GEMIN4P57678 1058 aaKnown RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 ATF7IP2Q5U623 682 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 SLC30A9Q6PML9 568 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 LRRC34Q8IZ02 419 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 ATPAF2Q8N5M1 289 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 ZMAT2Q96NC0 199 aaKnown RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 CHORDC1Q9UHD1 332 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 ZBTB12Q9Y330 459 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 IFT172Q9UG01 1749 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 CCDC78A2IDD5 438 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 C16orf96A6NNT2 1141 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 TRIM49D1C9J1S8 452 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 SLC37A4O43826 429 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 MYCP01106 439 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 GZMAP12544 262 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 PCYT1AP49585 367 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 GMPSP49915 693 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 PDAP1Q13442 181 aaKnown RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 SMTNL2Q2TAL5 461 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 ACCSLQ4AC99 568 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 ZC3H12BQ5HYM0 836 aaKnown RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 THEMIS2Q5TEJ8 643 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 MOXD1Q6UVY6 613 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 KAZALD1Q96I82 304 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 SH3GL3Q99963 347 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 ZBED2Q9BTP6 218 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 CXorf56Q9H5V9 222 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 TRIM45Q9H8W5 580 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 GTPBP10A4D1E9 387 aaKnown RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 UBE2Q2LH0YL09 131 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 MSH4O15457 936 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 AKAP10O43572 662 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 CDH2P19022 906 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 RPS12P25398 132 aaKnown RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 HNRNPH1P31943 449 aaKnown RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 CACNB2Q08289 660 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 TTC39BQ5VTQ0 682 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 LRRC8BQ6P9F7 803 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 PPP1R2P1Q96PQ5 205 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 COG4Q9H9E3 785 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 FAM49BQ9NUQ9 324 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 BLOC1S6Q9UL45 172 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 EEF2KO00418 725 aaKnown RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 SEC24DO94855 1032 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 EFHC1Q5JVL4 640 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 BTNL9Q6UXG8 535 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 SPATA2LQ8IUW3 424 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 FBXO25Q8TCJ0 367 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 SH3TC2Q8TF17 1288 aa11.93□□□□□ -0.5
PTPRF-203ENST00000372407 ZNF669Q96BR6 464 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 PABPC5Q96DU9 382 aaKnown RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 C20orf96Q9NUD7 363 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 ZNF70Q9UC06 446 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-203ENST00000372407 NDUFS3O75489 264 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 RBBP7Q16576 425 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 TEX9Q8N6V9 391 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 SHCBP1Q8NEM2 672 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 USP33Q8TEY7 942 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 TBX20Q9UMR3 447 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 SLC30A1Q9Y6M5 507 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 HIST1H2AGP0C0S8 130 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-203ENST00000372407 HIST1H2ADP20671 130 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 SERPINB10P48595 397 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 DCAF4L1Q3SXM0 396 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 ELMOD1Q8N336 334 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 FAM71DQ8N9W8 422 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 HIST1H2AHQ96KK5 128 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 HIST1H2AJQ99878 128 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 H2AFJQ9BTM1 129 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.92□□□□□ -0.51e-15■■□□□ 12.8
PTPRF-203ENST00000372407 TSR3Q9UJK0 312 aaKnown RBP11.92□□□□□ -0.5
PTPRF-203ENST00000372407 NWD1Q149M9 1564 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 ZSCAN9O15535 394 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-203ENST00000372407 HNRNPCP07910 306 aaKnown RBP eCLIP11.92□□□□□ -0.5
PTPRF-203ENST00000372407 KRT16P08779 473 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms