RNA–Protein interactions for RNA: ENST00000368841.6

SNX27-202, Transcript of sorting nexin family member 27, humanhuman

TSL 1 (best)

Gene SNX27, Length 7,070 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX27-202ENST00000368841 MIB1Q86YT6 1006 aa18.93■□□□□ 0.62
SNX27-202ENST00000368841 TSPAN17Q96FV3 270 aa18.93■□□□□ 0.62
SNX27-202ENST00000368841 ITGB6P18564 788 aa18.93■□□□□ 0.62
SNX27-202ENST00000368841 AP3M2P53677 418 aa18.93■□□□□ 0.62
SNX27-202ENST00000368841 ABCE1P61221 599 aaKnown RBP18.93■□□□□ 0.62
SNX27-202ENST00000368841 POU4F1Q01851 419 aa18.93■□□□□ 0.62
SNX27-202ENST00000368841 ZNF543Q08ER8 600 aa18.93■□□□□ 0.62
SNX27-202ENST00000368841 ERP27Q96DN0 273 aa18.93■□□□□ 0.62
SNX27-202ENST00000368841 CST8O60676 142 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 GSNP06396 782 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 MDH1P40925 334 aaKnown RBP18.92■□□□□ 0.62
SNX27-202ENST00000368841 DNAAF5Q86Y56 855 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 TEX9Q8N6V9 391 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 KCNF1Q9H3M0 494 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 CATSPERBQ9H7T0 1116 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 TARSP26639 723 aaKnown RBP18.92■□□□□ 0.62
SNX27-202ENST00000368841 DPYDQ12882 1025 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 BNIPLQ7Z465 357 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 ZNF669Q96BR6 464 aaPredicted RBP18.92■□□□□ 0.62
SNX27-202ENST00000368841 SCUBE2Q9NQ36 999 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 GEMIN8Q9NWZ8 242 aaKnown RBP18.92■□□□□ 0.62
SNX27-202ENST00000368841 SNX12Q9UMY4 172 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 M0QYT0 321 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 STXBP3O00186 592 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 GMPSP49915 693 aaPredicted RBP18.92■□□□□ 0.62
SNX27-202ENST00000368841 SPATA16Q9BXB7 569 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 GPRC5CQ9NQ84 441 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 RNF112Q9ULX5 631 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 RUVBL2Q9Y230 463 aaKnown RBP18.92■□□□□ 0.62
SNX27-202ENST00000368841 KCNK10P57789 538 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 MAP3K10Q02779 954 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 KYAT1Q16773 422 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 TDRD10Q5VZ19 366 aaKnown RBP18.92■□□□□ 0.62
SNX27-202ENST00000368841 CCDC60Q8IWA6 550 aaPredicted RBP18.92■□□□□ 0.62
SNX27-202ENST00000368841 PHF20Q9BVI0 1012 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 PDXKO00764 312 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 APOA1P02647 267 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 RPS7P62081 194 aaKnown RBP18.92■□□□□ 0.62
SNX27-202ENST00000368841 GRIN1Q05586 938 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 XKR3Q5GH77 459 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 TRIM9Q9C026 710 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 RNPEPQ9H4A4 650 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 HEATR9A2RTY3 570 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 CSDE1O75534 798 aaKnown RBP18.92■□□□□ 0.62
SNX27-202ENST00000368841 CPSF4O95639 269 aaKnown RBP18.92■□□□□ 0.62
SNX27-202ENST00000368841 RALBP11234 206 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 DPP3Q9NY33 737 aa18.92■□□□□ 0.62
SNX27-202ENST00000368841 HERC5Q9UII4 1024 aaKnown RBP18.92■□□□□ 0.62
SNX27-202ENST00000368841 MAP3K4Q9Y6R4 1608 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 PIGHQ14442 188 aaPredicted RBP18.91■□□□□ 0.62
SNX27-202ENST00000368841 CALR3Q96L12 384 aaKnown RBP18.91■□□□□ 0.62
SNX27-202ENST00000368841 DMAP1Q9NPF5 467 aaPredicted RBP18.91■□□□□ 0.62
SNX27-202ENST00000368841 ZNRF3Q9ULT6 936 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 SLC16A3O15427 465 aaKnown RBP18.91■□□□□ 0.62
SNX27-202ENST00000368841 LZTS3O60299 673 aaPredicted RBP18.91■□□□□ 0.62
SNX27-202ENST00000368841 CLEC16AQ2KHT3 1053 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 ARHGAP17Q68EM7 881 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 C16orf89Q6UX73 402 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 POP1Q99575 1024 aaKnown RBP18.91■□□□□ 0.62
SNX27-202ENST00000368841 MAN1C1Q9NR34 630 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 RNF103O00237 685 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 CLASP2O75122 1294 aaKnown RBP18.91■□□□□ 0.62
SNX27-202ENST00000368841 DGKDQ16760 1214 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 IQCA1LA6NCM1 817 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 DARSP14868 501 aaKnown RBP18.91■□□□□ 0.62
SNX27-202ENST00000368841 ATP6V1B1P15313 513 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 KCNA3P22001 575 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 S100A5P33763 92 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 STK4Q13043 487 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 ASZ1Q8WWH4 475 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 PARK7Q99497 189 aaKnown RBP18.91■□□□□ 0.62
SNX27-202ENST00000368841 CHUKO15111 745 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 ZC3H11AO75152 810 aaKnown RBP eCLIP18.91■□□□□ 0.62
SNX27-202ENST00000368841 MAGEA4P43358 317 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 MAP3K7CLP57077 242 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 KYNUQ16719 465 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 ATG9AQ7Z3C6 839 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 TFB1MQ8WVM0 346 aaKnown RBP18.91■□□□□ 0.62
SNX27-202ENST00000368841 APOL2Q9BQE5 337 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 MOV10L1Q9BXT6 1211 aaKnown RBP18.91■□□□□ 0.62
SNX27-202ENST00000368841 SAMD9LQ8IVG5 1584 aa18.91■□□□□ 0.62
SNX27-202ENST00000368841 PRKCQQ04759 706 aa18.9■□□□□ 0.62
SNX27-202ENST00000368841 GLB1LQ6UWU2 654 aa18.9■□□□□ 0.62
SNX27-202ENST00000368841 DEFB128Q7Z7B8 93 aa18.9■□□□□ 0.62
SNX27-202ENST00000368841 GJD4Q96KN9 370 aaPredicted RBP18.9■□□□□ 0.62
SNX27-202ENST00000368841 BBS2Q9BXC9 721 aa18.9■□□□□ 0.62
SNX27-202ENST00000368841 WDCPQ9H6R7 721 aa18.9■□□□□ 0.62
SNX27-202ENST00000368841 MYOZ2Q9NPC6 264 aa18.9■□□□□ 0.62
SNX27-202ENST00000368841 PFASO15067 1338 aa18.9■□□□□ 0.62
SNX27-202ENST00000368841 ZNF609O15014 1411 aa18.9■□□□□ 0.62
SNX27-202ENST00000368841 RASSF9O75901 435 aa18.9■□□□□ 0.62
SNX27-202ENST00000368841 MBL2P11226 248 aaPredicted RBP18.9■□□□□ 0.62
SNX27-202ENST00000368841 NUDT2P50583 147 aa18.9■□□□□ 0.62
SNX27-202ENST00000368841 SLC18A3Q16572 532 aa18.9■□□□□ 0.62
SNX27-202ENST00000368841 CENPPQ6IPU0 288 aa18.9■□□□□ 0.62
SNX27-202ENST00000368841 FGD2Q7Z6J4 655 aa18.9■□□□□ 0.62
SNX27-202ENST00000368841 NEDD1Q8NHV4 660 aa18.9■□□□□ 0.62
SNX27-202ENST00000368841 SEPT1Q8WYJ6 367 aa18.9■□□□□ 0.62
SNX27-202ENST00000368841 ATG4AQ8WYN0 398 aa18.9■□□□□ 0.62
SNX27-202ENST00000368841 ARL2BPQ9Y2Y0 163 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms