RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 RNF10Q8N5U6 811 aaKnown RBP19.79■□□□□ 0.76
CLN3-206ENST00000360019 C12orf29Q8N999 325 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 HASPINQ8TF76 798 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 STXBP5LQ9Y2K9 1186 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 NCANO14594 1321 aa19.78■□□□□ 0.76
CLN3-206ENST00000360019 A0A0A6YYK5 440 aaPredicted RBP19.78■□□□□ 0.76
CLN3-206ENST00000360019 O00370 1275 aa19.78■□□□□ 0.76
CLN3-206ENST00000360019 KIF4AO95239 1232 aa19.78■□□□□ 0.76
CLN3-206ENST00000360019 GNL1P36915 607 aaPredicted RBP19.78■□□□□ 0.76
CLN3-206ENST00000360019 MFSD5Q6N075 450 aa19.78■□□□□ 0.76
CLN3-206ENST00000360019 DENND1BQ6P3S1 775 aa19.78■□□□□ 0.76
CLN3-206ENST00000360019 DSTYKQ6XUX3 929 aa19.78■□□□□ 0.76
CLN3-206ENST00000360019 ACOT1Q86TX2 421 aa19.78■□□□□ 0.76
CLN3-206ENST00000360019 WDTC1Q8N5D0 677 aa19.78■□□□□ 0.76
CLN3-206ENST00000360019 KIF18AQ8NI77 898 aa19.78■□□□□ 0.76
CLN3-206ENST00000360019 DNAJB4Q9UDY4 337 aa19.78■□□□□ 0.76
CLN3-206ENST00000360019 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.78■□□□□ 0.76
CLN3-206ENST00000360019 GABRDO14764 452 aa19.77■□□□□ 0.76
CLN3-206ENST00000360019 MED7O43513 233 aa19.77■□□□□ 0.76
CLN3-206ENST00000360019 LSM8O95777 96 aaKnown RBP19.77■□□□□ 0.76
CLN3-206ENST00000360019 PDGFRBP09619 1106 aa19.77■□□□□ 0.76
CLN3-206ENST00000360019 CDH5P33151 784 aaPredicted RBP19.77■□□□□ 0.76
CLN3-206ENST00000360019 NSFP46459 744 aaKnown RBP19.77■□□□□ 0.76
CLN3-206ENST00000360019 BRCC3P46736 316 aa19.77■□□□□ 0.76
CLN3-206ENST00000360019 RNASELQ05823 741 aaKnown RBP19.77■□□□□ 0.76
CLN3-206ENST00000360019 SGO2Q562F6 1265 aa19.77■□□□□ 0.76
CLN3-206ENST00000360019 DCLRE1AQ6PJP8 1040 aa19.77■□□□□ 0.76
CLN3-206ENST00000360019 C1orf131Q8NDD1 294 aaKnown RBP19.77■□□□□ 0.76
CLN3-206ENST00000360019 RFFLQ8WZ73 363 aa19.77■□□□□ 0.76
CLN3-206ENST00000360019 NOX5Q96PH1 765 aa19.77■□□□□ 0.76
CLN3-206ENST00000360019 SNX25Q9H3E2 840 aa19.77■□□□□ 0.76
CLN3-206ENST00000360019 OSGEPQ9NPF4 335 aa19.77■□□□□ 0.76
CLN3-206ENST00000360019 KIAA1257Q9ULG3 409 aa19.77■□□□□ 0.76
CLN3-206ENST00000360019 TIMM13Q9Y5L4 95 aaPredicted RBP19.77■□□□□ 0.76
CLN3-206ENST00000360019 I3L4J1 428 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 ATMINO43313 823 aaPredicted RBP19.76■□□□□ 0.75
CLN3-206ENST00000360019 HOXA2O43364 376 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 MICAL2O94851 1124 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 FAM163BP0C2L3 166 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 GPC5P78333 572 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 CNGA2Q16280 664 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 MON1BQ7L1V2 547 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 MCOLN2Q8IZK6 566 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 TRIM58Q8NG06 486 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 SLC35G2Q8TBE7 412 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 LPIN3Q9BQK8 851 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 CHORDC1Q9UHD1 332 aaPredicted RBP19.76■□□□□ 0.75
CLN3-206ENST00000360019 LTBP2Q14767 1821 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 ALPK3Q96L96 1907 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 CASQ1P31415 396 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 NAP1L1P55209 391 aaKnown RBP19.76■□□□□ 0.75
CLN3-206ENST00000360019 PTP4A2Q12974 167 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 C2CD6Q53TS8 623 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.76■□□□□ 0.75
CLN3-206ENST00000360019 PHF13Q86YI8 300 aaPredicted RBP19.76■□□□□ 0.75
CLN3-206ENST00000360019 CRYBG2Q8N1P7 616 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 ZNF653Q96CK0 615 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 LHX5Q9H2C1 402 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 NRDE2Q9H7Z3 1164 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 HCSTQ9UBK5 93 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 GTF3C4Q9UKN8 822 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 COG5Q9UP83 839 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 PCDHGC5Q9Y5F6 944 aa19.76■□□□□ 0.75
CLN3-206ENST00000360019 M0QZQ0 153 aa19.75■□□□□ 0.75
CLN3-206ENST00000360019 OR1G1P47890 313 aa19.75■□□□□ 0.75
CLN3-206ENST00000360019 PPP1R26Q5T8A7 1209 aaPredicted RBP19.75■□□□□ 0.75
CLN3-206ENST00000360019 TMEM86AQ8N2M4 240 aa19.75■□□□□ 0.75
CLN3-206ENST00000360019 TMEM199Q8N511 208 aa19.75■□□□□ 0.75
CLN3-206ENST00000360019 TMEM35BQ8NCS4 154 aa19.75■□□□□ 0.75
CLN3-206ENST00000360019 RSPH1Q8WYR4 309 aa19.75■□□□□ 0.75
CLN3-206ENST00000360019 FAM193BQ96PV7 902 aaPredicted RBP19.75■□□□□ 0.75
CLN3-206ENST00000360019 C11orf70Q9BRQ4 267 aa19.75■□□□□ 0.75
CLN3-206ENST00000360019 ZNF518BQ9C0D4 1074 aa19.75■□□□□ 0.75
CLN3-206ENST00000360019 FAM49BQ9NUQ9 324 aa19.75■□□□□ 0.75
CLN3-206ENST00000360019 CYTH4Q9UIA0 394 aa19.75■□□□□ 0.75
CLN3-206ENST00000360019 TSPAN16Q9UKR8 245 aa19.75■□□□□ 0.75
CLN3-206ENST00000360019 MYH10P35580 1976 aa19.75■□□□□ 0.75
CLN3-206ENST00000360019 ABHD14A-ACY1A0A1B0GW23 586 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 GRID2IPA4D2P6 1211 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 TBKBP1A7MCY6 615 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 TMEM189-UBE2V1I3L0A0 370 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 UPP2O95045 317 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 CYP1A2P05177 515 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 MMP8P22894 467 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 PAX3P23760 479 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 NOP2P46087 812 aaKnown RBP19.74■□□□□ 0.75
CLN3-206ENST00000360019 LCLAT1Q6UWP7 414 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 MMS22LQ6ZRQ5 1243 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 CEP83Q9Y592 693 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 TSC2P49815 1807 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 FNDC1Q4ZHG4 1894 aaPredicted RBP19.74■□□□□ 0.75
CLN3-206ENST00000360019 M0QYV0 167 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 PALMO75781 387 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 ACRP10323 421 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 ODC1P11926 461 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 RRM1P23921 792 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 ACAT1P24752 427 aaKnown RBP19.74■□□□□ 0.75
CLN3-206ENST00000360019 TCEAL1Q15170 157 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 GOLGA7BQ2TAP0 167 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 LLGL2Q6P1M3 1020 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms