RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 UBTFL6P0CB48 400 aaPredicted RBP10.71□□□□□ -0.7
SYNE1-203ENST00000354674 FLT3P36888 993 aa10.71□□□□□ -0.7
SYNE1-203ENST00000354674 FMO5P49326 533 aa10.71□□□□□ -0.7
SYNE1-203ENST00000354674 INHBCP55103 352 aa10.71□□□□□ -0.7
SYNE1-203ENST00000354674 NLRP11P59045 1033 aaKnown RBP10.71□□□□□ -0.7
SYNE1-203ENST00000354674 CCDC38Q502W7 563 aa10.71□□□□□ -0.7
SYNE1-203ENST00000354674 FOXB2Q5VYV0 432 aa10.71□□□□□ -0.7
SYNE1-203ENST00000354674 PAPD7Q5XG87 772 aaKnown RBP10.71□□□□□ -0.7
SYNE1-203ENST00000354674 TAF2Q6P1X5 1199 aa10.71□□□□□ -0.7
SYNE1-203ENST00000354674 EMBQ6PCB8 327 aa10.71□□□□□ -0.7
SYNE1-203ENST00000354674 RNF180Q86T96 592 aa10.71□□□□□ -0.7
SYNE1-203ENST00000354674 LRRC34Q8IZ02 419 aa10.71□□□□□ -0.7
SYNE1-203ENST00000354674 RDH13Q8NBN7 331 aa10.71□□□□□ -0.7
SYNE1-203ENST00000354674 PPP1R13LQ8WUF5 828 aa10.71□□□□□ -0.7
SYNE1-203ENST00000354674 ERLEC1Q96DZ1 483 aa10.71□□□□□ -0.7
SYNE1-203ENST00000354674 EDEM3Q9BZQ6 932 aa10.71□□□□□ -0.7
SYNE1-203ENST00000354674 HAUS4Q9H6D7 363 aa10.71□□□□□ -0.7
SYNE1-203ENST00000354674 PLCB1Q9NQ66 1216 aa10.71□□□□□ -0.7
SYNE1-203ENST00000354674 GOLGA8IPA6NC78 632 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 MOXD2PA6NHM9 499 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 GOLGA8JA6NMD2 632 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 P4HA2O15460 535 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 NOL4O94818 638 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 HNRNPCP07910 306 aaKnown RBP eCLIP10.7□□□□□ -0.7
SYNE1-203ENST00000354674 KRT13P13646 458 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 SP100P23497 879 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-203ENST00000354674 PAFAH1B1P43034 410 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 SLCO1A2P46721 670 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 DLG4P78352 724 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 PTPN11Q06124 597 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-203ENST00000354674 PRPF4BQ13523 1007 aaKnown RBP10.7□□□□□ -0.7
SYNE1-203ENST00000354674 KBTBD12Q3ZCT8 623 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 DCAF17Q5H9S7 520 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-203ENST00000354674 RBM12BQ8IXT5 1001 aaKnown RBP10.7□□□□□ -0.7
SYNE1-203ENST00000354674 LMNTD2Q8IXW0 634 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 ANKS4BQ8N8V4 417 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 DNAJC7Q99615 494 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 BRD8Q9H0E9 1235 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 ZNF711Q9Y462 761 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 GOLGA6L10A0A0M3HER8 536 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 INO80B-WBP1J3KQ70 363 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 EPHB6O15197 1021 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 CLDN3O15551 220 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 B4GALT5O43286 388 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 FAM200BP0CF97 657 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 GTF2H1P32780 548 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 KIF5AQ12840 1032 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 TMED1Q13445 227 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 PSMD6Q15008 389 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 CBWD6Q4V339 395 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 CBWD3Q5JTY5 395 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 CBWD5Q5RIA9 395 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 ATF7IP2Q5U623 682 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 GDF6Q6KF10 455 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-203ENST00000354674 MPZL3Q6UWV2 235 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 NLRP7Q8WX94 980 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 ZNF668Q96K58 619 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-203ENST00000354674 MSTO1Q9BUK6 570 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 INO80BQ9C086 356 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-203ENST00000354674 FBXL5Q9UKA1 691 aa10.7□□□□□ -0.7
SYNE1-203ENST00000354674 LUC7L2Q9Y383 392 aaKnown RBP10.7□□□□□ -0.7
SYNE1-203ENST00000354674 FTCDO95954 541 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 DRD4P21917 467 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 ACLYP53396 1101 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 ATP11AP98196 1134 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 POU5F1Q01860 360 aaKnown RBP10.69□□□□□ -0.7
SYNE1-203ENST00000354674 SFMBT2Q5VUG0 894 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 IQCEQ6IPM2 695 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 SERINC5Q86VE9 423 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 SLC43A3Q8NBI5 491 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 DNAJB3Q8WWF6 145 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 DNAJC1Q96KC8 554 aaKnown RBP10.69□□□□□ -0.7
SYNE1-203ENST00000354674 FAM213AQ9BRX8 229 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 GANQ9H2C0 597 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 GOLPH3Q9H4A6 298 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 CDHR5Q9HBB8 845 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 SIX2Q9NPC8 291 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 PAK6Q9NQU5 681 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-203ENST00000354674 MYH10P35580 1976 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 TRIP12Q14669 1992 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-203ENST00000354674 FOXO6A8MYZ6 492 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 MAGEB3O15480 346 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 TSPAN1O60635 241 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 RPLP2P05387 115 aaKnown RBP10.69□□□□□ -0.7
SYNE1-203ENST00000354674 TRIM49P0CI25 452 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 TRIM49CP0CI26 452 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 DARSP14868 501 aaKnown RBP10.69□□□□□ -0.7
SYNE1-203ENST00000354674 PON1P27169 355 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 GSTT1P30711 240 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 HSD17B3P37058 310 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 PPP2R2AP63151 447 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 PPP3CAQ08209 521 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 TRPM8Q7Z2W7 1104 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 IFT20Q8IY31 132 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 LMO3Q8TAP4 145 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 PRMT1Q99873 361 aaKnown RBP10.69□□□□□ -0.7
SYNE1-203ENST00000354674 CENPOQ9BU64 300 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 GCOM2Q9BZD3 368 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-203ENST00000354674 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.69□□□□□ -0.7
SYNE1-203ENST00000354674 SNX12Q9UMY4 172 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms