RNA–Protein interactions for RNA: ENST00000348495.10

SSBP4-202, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SSBP4, Length 1,721 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-202ENST00000348495 CDR2Q01850 454 aa28.83■■■□□ 2.21
SSBP4-202ENST00000348495 MTF1Q14872 753 aa28.83■■■□□ 2.21
SSBP4-202ENST00000348495 FAM171A1Q5VUB5 890 aa28.83■■■□□ 2.21
SSBP4-202ENST00000348495 METTL23Q86XA0 190 aa28.83■■■□□ 2.21
SSBP4-202ENST00000348495 ZNF677Q86XU0 584 aa28.83■■■□□ 2.21
SSBP4-202ENST00000348495 DPEP3Q9H4B8 488 aa28.83■■■□□ 2.21
SSBP4-202ENST00000348495 AAASQ9NRG9 546 aa28.83■■■□□ 2.21
SSBP4-202ENST00000348495 SPG21Q9NZD8 308 aa28.83■■■□□ 2.21
SSBP4-202ENST00000348495 GRXCR1A8MXD5 290 aa28.82■■■□□ 2.2
SSBP4-202ENST00000348495 PDGFRBP09619 1106 aa28.82■■■□□ 2.2
SSBP4-202ENST00000348495 OVOS1Q6IE37 1185 aa28.82■■■□□ 2.2
SSBP4-202ENST00000348495 PDZRN4Q6ZMN7 1036 aaPredicted RBP28.82■■■□□ 2.2
SSBP4-202ENST00000348495 ACOT1Q86TX2 421 aa28.82■■■□□ 2.2
SSBP4-202ENST00000348495 ZNF606Q8WXB4 792 aa28.82■■■□□ 2.2
SSBP4-202ENST00000348495 CCDC42Q96M95 316 aa28.82■■■□□ 2.2
SSBP4-202ENST00000348495 KIAA1257Q9ULG3 409 aa28.82■■■□□ 2.2
SSBP4-202ENST00000348495 KIAA0319Q5VV43 1072 aa28.81■■■□□ 2.2
SSBP4-202ENST00000348495 SLC30A5Q8TAD4 765 aa28.81■■■□□ 2.2
SSBP4-202ENST00000348495 TRIM44Q96DX7 344 aaPredicted RBP28.81■■■□□ 2.2
SSBP4-202ENST00000348495 VDRP11473 427 aa28.8■■■□□ 2.2
SSBP4-202ENST00000348495 BMP8BP34820 402 aa28.8■■■□□ 2.2
SSBP4-202ENST00000348495 PPM1AP35813 382 aa28.8■■■□□ 2.2
SSBP4-202ENST00000348495 FMO1Q01740 532 aa28.8■■■□□ 2.2
SSBP4-202ENST00000348495 YWHAHQ04917 246 aaPredicted RBP28.8■■■□□ 2.2
SSBP4-202ENST00000348495 MRPL58Q14197 206 aaKnown RBP28.8■■■□□ 2.2
SSBP4-202ENST00000348495 TAS1R1Q7RTX1 841 aa28.8■■■□□ 2.2
SSBP4-202ENST00000348495 PCDHB12Q9Y5F1 795 aa28.8■■■□□ 2.2
SSBP4-202ENST00000348495 EPN1Q9Y6I3 576 aaPredicted RBP28.8■■■□□ 2.2
SSBP4-202ENST00000348495 DDX3XO00571 662 aaKnown RBP eCLIP28.8■■■□□ 2.21e-29■■■■□ 21.4
SSBP4-202ENST00000348495 MMEP08473 750 aa28.8■■■□□ 2.2
SSBP4-202ENST00000348495 BRD2P25440 801 aaKnown RBP28.8■■■□□ 2.2
SSBP4-202ENST00000348495 KIF11P52732 1056 aa28.8■■■□□ 2.2
SSBP4-202ENST00000348495 BMS1Q14692 1282 aaKnown RBP28.8■■■□□ 2.2
SSBP4-202ENST00000348495 TAF3Q5VWG9 929 aa28.8■■■□□ 2.2
SSBP4-202ENST00000348495 LNX1Q8TBB1 728 aaPredicted RBP28.8■■■□□ 2.2
SSBP4-202ENST00000348495 TMEM169Q96HH4 297 aa28.8■■■□□ 2.2
SSBP4-202ENST00000348495 TNIP3Q96KP6 325 aa28.8■■■□□ 2.2
SSBP4-202ENST00000348495 HEXIM2Q96MH2 286 aaKnown RBP28.8■■■□□ 2.2
SSBP4-202ENST00000348495 ACBD6Q9BR61 282 aa28.8■■■□□ 2.2
SSBP4-202ENST00000348495 ADAMTS1Q9UHI8 967 aa28.8■■■□□ 2.2
SSBP4-202ENST00000348495 PUF60Q9UHX1 559 aaKnown RBP28.8■■■□□ 2.2
SSBP4-202ENST00000348495 TNRC18O15417 2968 aaPredicted RBP28.79■■■□□ 2.2
SSBP4-202ENST00000348495 A0A087X0T9 212 aa28.79■■■□□ 2.2
SSBP4-202ENST00000348495 LINC01553A4QN01 128 aa28.79■■■□□ 2.2
SSBP4-202ENST00000348495 THAP12O43422 761 aa28.79■■■□□ 2.2
SSBP4-202ENST00000348495 FAM228BP0C875 321 aa28.79■■■□□ 2.2
SSBP4-202ENST00000348495 CD19P15391 556 aa28.79■■■□□ 2.2
SSBP4-202ENST00000348495 ACAT1P24752 427 aaKnown RBP28.79■■■□□ 2.2
SSBP4-202ENST00000348495 PCSK1P29120 753 aa28.79■■■□□ 2.2
SSBP4-202ENST00000348495 VARS2Q5ST30 1063 aaKnown RBP28.79■■■□□ 2.2
SSBP4-202ENST00000348495 GLYCTKQ8IVS8 523 aa28.79■■■□□ 2.2
SSBP4-202ENST00000348495 C12orf29Q8N999 325 aa28.79■■■□□ 2.2
SSBP4-202ENST00000348495 CHST7Q9NS84 486 aa28.79■■■□□ 2.2
SSBP4-202ENST00000348495 CDH9Q9ULB4 789 aa28.79■■■□□ 2.2
SSBP4-202ENST00000348495 NENFQ9UMX5 172 aa28.79■■■□□ 2.2
SSBP4-202ENST00000348495 NDUFA10O95299 355 aa28.78■■■□□ 2.2
SSBP4-202ENST00000348495 LCA5LO95447 670 aa28.78■■■□□ 2.2
SSBP4-202ENST00000348495 MYOGP15173 224 aa28.78■■■□□ 2.2
SSBP4-202ENST00000348495 SLC18A3Q16572 532 aa28.78■■■□□ 2.2
SSBP4-202ENST00000348495 DDX53Q86TM3 631 aaKnown RBP28.78■■■□□ 2.2
SSBP4-202ENST00000348495 VPS36Q86VN1 386 aa28.78■■■□□ 2.2
SSBP4-202ENST00000348495 B3GALNT2Q8NCR0 500 aa28.78■■■□□ 2.2
SSBP4-202ENST00000348495 OR10T2Q8NGX3 314 aa28.78■■■□□ 2.2
SSBP4-202ENST00000348495 B3GALT6Q96L58 329 aa28.78■■■□□ 2.2
SSBP4-202ENST00000348495 PCDHB18PQ96TA0 734 aa28.78■■■□□ 2.2
SSBP4-202ENST00000348495 SYT15Q9BQS2 421 aa28.78■■■□□ 2.2
SSBP4-202ENST00000348495 TTPALQ9BTX7 342 aa28.78■■■□□ 2.2
SSBP4-202ENST00000348495 DNAI2Q9GZS0 605 aa28.78■■■□□ 2.2
SSBP4-202ENST00000348495 DEF6Q9H4E7 631 aa28.78■■■□□ 2.2
SSBP4-202ENST00000348495 O00370 1275 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 AKR1B10O60218 316 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 ATP2C2O75185 946 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 CFHP08603 1231 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 CYLC1P35663 651 aaPredicted RBP28.77■■■□□ 2.2
SSBP4-202ENST00000348495 SGO2Q562F6 1265 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 RTP2Q5QGT7 225 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 PALB2Q86YC2 1186 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 THEM5Q8N1Q8 247 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 GBF1Q92538 1859 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 LPIN3Q9BQK8 851 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 SPTLC3Q9NUV7 552 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 PCDHGC3Q9UN70 934 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 PCDHA11Q9Y5I1 949 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 EIF3CLB5ME19 914 aaKnown RBP28.77■■■□□ 2.2
SSBP4-202ENST00000348495 ZNF263O14978 683 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 SOD2P04179 222 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 PTPN1P18031 435 aaKnown RBP28.77■■■□□ 2.2
SSBP4-202ENST00000348495 TNFAIP3P21580 790 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 PSMC1P62191 440 aaKnown RBP28.77■■■□□ 2.2
SSBP4-202ENST00000348495 GFPT1Q06210 699 aaPredicted RBP28.77■■■□□ 2.2
SSBP4-202ENST00000348495 CNGA2Q16280 664 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 ARHGAP17Q68EM7 881 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 CEP57Q86XR8 500 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 EIF3CQ99613 913 aaKnown RBP28.77■■■□□ 2.2
SSBP4-202ENST00000348495 PKMYT1Q99640 499 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP28.77■■■□□ 2.2
SSBP4-202ENST00000348495 CRTAC1Q9NQ79 661 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 PYCARDQ9ULZ3 195 aa28.77■■■□□ 2.2
SSBP4-202ENST00000348495 ARHGEF15O94989 841 aa28.76■■■□□ 2.19
SSBP4-202ENST00000348495 BMPR1AP36894 532 aa28.76■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms