RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 CEP57Q86XR8 500 aa20.25■□□□□ 0.83
CHMP4A-201ENST00000347519 EPS8L1Q8TE68 723 aa20.25■□□□□ 0.83
CHMP4A-201ENST00000347519 DDX1Q92499 740 aaKnown RBP20.25■□□□□ 0.83
CHMP4A-201ENST00000347519 NT5C1AQ9BXI3 368 aa20.25■□□□□ 0.83
CHMP4A-201ENST00000347519 DSEQ9UL01 958 aa20.25■□□□□ 0.83
CHMP4A-201ENST00000347519 PCDHA11Q9Y5I1 949 aa20.25■□□□□ 0.83
CHMP4A-201ENST00000347519 SOWAHDA6NJG2 315 aa20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 SYN3O14994 580 aa20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 FGF18O76093 207 aa20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 BMPR1AP36894 532 aa20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 EIF4A3P38919 411 aaKnown RBP20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 CDR1P51861 262 aa20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 PSMC1P62191 440 aaKnown RBP20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 MRPL58Q14197 206 aaKnown RBP20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 MTF1Q14872 753 aa20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 TSR1Q2NL82 804 aaKnown RBP20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 OVOS1Q6IE37 1185 aa20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 METTL23Q86XA0 190 aa20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 TTC39CQ8N584 583 aa20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 C12orf29Q8N999 325 aa20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 KLHL23Q8NBE8 558 aa20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 OR10T2Q8NGX3 314 aa20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 TMEM169Q96HH4 297 aa20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 BAG1Q99933 345 aaPredicted RBP20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 PBX4Q9BYU1 374 aa20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 FAM124BQ9H5Z6 455 aaPredicted RBP20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 AAASQ9NRG9 546 aa20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 ZNHIT6Q9NWK9 470 aaKnown RBP20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 PCDHB12Q9Y5F1 795 aa20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 LAMA2P24043 3122 aaKnown RBP20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 SZT2Q5T011 3432 aa20.24■□□□□ 0.83
CHMP4A-201ENST00000347519 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.23■□□□□ 0.83
CHMP4A-201ENST00000347519 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.23■□□□□ 0.83
CHMP4A-201ENST00000347519 PAEPP09466 180 aa20.23■□□□□ 0.83
CHMP4A-201ENST00000347519 GNA15P30679 374 aa20.23■□□□□ 0.83
CHMP4A-201ENST00000347519 CTNNB1P35222 781 aa20.23■□□□□ 0.83
CHMP4A-201ENST00000347519 LHX1P48742 406 aa20.23■□□□□ 0.83
CHMP4A-201ENST00000347519 CDK17Q00537 523 aa20.23■□□□□ 0.83
CHMP4A-201ENST00000347519 YWHAHQ04917 246 aaPredicted RBP20.23■□□□□ 0.83
CHMP4A-201ENST00000347519 ELAVL2Q12926 359 aaKnown RBP20.23■□□□□ 0.83
CHMP4A-201ENST00000347519 PRSS55Q6UWB4 352 aaPredicted RBP20.23■□□□□ 0.83
CHMP4A-201ENST00000347519 RSPO2Q6UXX9 243 aaPredicted RBP20.23■□□□□ 0.83
CHMP4A-201ENST00000347519 RAD9BQ6WBX8 426 aa20.23■□□□□ 0.83
CHMP4A-201ENST00000347519 TDHQ8IZJ6 230 aa20.23■□□□□ 0.83
CHMP4A-201ENST00000347519 CRYBG2Q8N1P7 616 aa20.23■□□□□ 0.83
CHMP4A-201ENST00000347519 LNX1Q8TBB1 728 aaPredicted RBP20.23■□□□□ 0.83
CHMP4A-201ENST00000347519 HERC2P3Q9BVR0 1158 aa20.23■□□□□ 0.83
CHMP4A-201ENST00000347519 CRTAC1Q9NQ79 661 aa20.23■□□□□ 0.83
CHMP4A-201ENST00000347519 PUF60Q9UHX1 559 aaKnown RBP20.23■□□□□ 0.83
CHMP4A-201ENST00000347519 OAZ2O95190 189 aa20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 SOD2P04179 222 aa20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 MMEP08473 750 aa20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 CD19P15391 556 aa20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 FMO1Q01740 532 aa20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 TAP1Q03518 808 aa20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 ASTE1Q2TB18 679 aaPredicted RBP20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 TDRD12Q587J7 1177 aaKnown RBP20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 DDX53Q86TM3 631 aaKnown RBP20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 SPATA18Q8TC71 538 aa20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 ZNF606Q8WXB4 792 aa20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 HEXIM2Q96MH2 286 aaKnown RBP20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 PCDHB18PQ96TA0 734 aa20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 AGPAT1Q99943 283 aa20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 SYT15Q9BQS2 421 aa20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 TTPALQ9BTX7 342 aa20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 NKX2-4Q9H2Z4 354 aa20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 NHEJ1Q9H9Q4 299 aaPredicted RBP20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 CHST7Q9NS84 486 aa20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 MTUS1Q9ULD2 1270 aa20.22■□□□□ 0.83
CHMP4A-201ENST00000347519 FAM170AA1A519 330 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 ARHGEF37A1IGU5 675 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 MYBPHLA2RUH7 354 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 THAP12O43422 761 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 TBC1D4O60343 1298 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 PTPN1P18031 435 aaKnown RBP20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 PPM1AP35813 382 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 PDE6CP51160 858 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 BPIFB4P59827 614 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 PLCB3Q01970 1234 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 MAPK8IP2Q13387 824 aaPredicted RBP20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 USP41Q3LFD5 358 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 SMYD5Q6GMV2 418 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 CYP26C1Q6V0L0 522 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 LRRTM3Q86VH5 581 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 PALB2Q86YC2 1186 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 B3GALNT2Q8NCR0 500 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 PKMYT1Q99640 499 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 FAM49BQ9NUQ9 324 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 TMLHEQ9NVH6 421 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 DDX3XO00571 662 aaKnown RBP eCLIP20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 OR4Q2P0C623 313 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 CCDC172P0C7W6 258 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 VDRP11473 427 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 CCDC130P13994 396 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 CDR2Q01850 454 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 MDH1BQ5I0G3 518 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 PPP1R26Q5T8A7 1209 aaPredicted RBP20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 TMTC1Q8IUR5 882 aa20.21■□□□□ 0.83
CHMP4A-201ENST00000347519 FMNL3Q8IVF7 1028 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms