RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 ISCUQ9H1K1 167 aa13.83□□□□□ -0.19
COL18A1-201ENST00000342220 NEUROG2Q9H2A3 272 aa13.83□□□□□ -0.19
COL18A1-201ENST00000342220 KLC4Q9NSK0 619 aa13.83□□□□□ -0.19
COL18A1-201ENST00000342220 DPP3Q9NY33 737 aa13.83□□□□□ -0.19
COL18A1-201ENST00000342220 NOC2LQ9Y3T9 749 aaKnown RBP13.83□□□□□ -0.19
COL18A1-201ENST00000342220 CASTOR2A6NHX0 329 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 ITGA4P13612 1032 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 ACAT1P24752 427 aaKnown RBP13.83□□□□□ -0.2
COL18A1-201ENST00000342220 ADORA2BP29275 332 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 HSPA9P38646 679 aaKnown RBP13.83□□□□□ -0.2
COL18A1-201ENST00000342220 AFF1P51825 1210 aaKnown RBP13.83□□□□□ -0.2
COL18A1-201ENST00000342220 FMO1Q01740 532 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 SNX17Q15036 470 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 ZNF564Q8TBZ8 553 aaPredicted RBP13.83□□□□□ -0.2
COL18A1-201ENST00000342220 HAUS1Q96CS2 278 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 FBXL18Q96ME1 805 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 MIS12Q9H081 205 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 CPSF3Q9UKF6 684 aaKnown RBP13.83□□□□□ -0.2
COL18A1-201ENST00000342220 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.83□□□□□ -0.2
COL18A1-201ENST00000342220 WDR90Q96KV7 1748 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 PTPRFP10586 1907 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 PI4K2BG5E9Z4 385 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 TLR3O15455 904 aaKnown RBP13.83□□□□□ -0.2
COL18A1-201ENST00000342220 SART1O43290 800 aaKnown RBP13.83□□□□□ -0.2
COL18A1-201ENST00000342220 CD52P31358 61 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 HPDP32754 393 aaPredicted RBP13.83□□□□□ -0.2
COL18A1-201ENST00000342220 HSD17B3P37058 310 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 GRIK3Q13003 919 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 PTGISQ16647 500 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 IFI16Q16666 785 aaKnown RBP13.83□□□□□ -0.2
COL18A1-201ENST00000342220 ACOT1Q86TX2 421 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 CCDC26Q8TAB7 109 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 ACTRT1Q8TDG2 376 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 SHC3Q92529 594 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 WNT8BQ93098 351 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 TRPV6Q9H1D0 765 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 PTPN22Q9Y2R2 807 aa13.83□□□□□ -0.2
COL18A1-201ENST00000342220 MRPL42Q9Y6G3 142 aaKnown RBP13.83□□□□□ -0.2
COL18A1-201ENST00000342220 CNTNAP2Q9UHC6 1331 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 PGRMC1O00264 195 aaKnown RBP13.82□□□□□ -0.2
COL18A1-201ENST00000342220 F2P00734 622 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 FGGP02679 453 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 PRKCIP41743 596 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 SEC24CP53992 1094 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 GPC5P78333 572 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 PURAQ00577 322 aaKnown RBP13.82□□□□□ -0.2
COL18A1-201ENST00000342220 CCDC142Q17RM4 750 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 FAM117BQ6P1L5 589 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 NOTUMQ6P988 496 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 FAM71AQ8IYT1 594 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 RPS6KC1Q96S38 1066 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 GAD1Q99259 594 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 NIF3L1Q9GZT8 377 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 TJP2Q9UDY2 1190 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 TNFSF13BQ9Y275 285 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 IGKV6-21A0A0C4DH24 114 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 CES2O00748 559 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 HOXC6P09630 235 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 FLT3P36888 993 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 MCL1Q07820 350 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 UAP1Q16222 522 aaPredicted RBP13.82□□□□□ -0.2
COL18A1-201ENST00000342220 SGSM1Q2NKQ1 1148 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 TSHZ1Q6ZSZ6 1077 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 ZNF467Q7Z7K2 595 aaPredicted RBP13.82□□□□□ -0.2
COL18A1-201ENST00000342220 EMC1Q8N766 993 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 ZNF784Q8NCA9 323 aaPredicted RBP13.82□□□□□ -0.2
COL18A1-201ENST00000342220 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.82□□□□□ -0.24e-16■■□□□ 14.1
COL18A1-201ENST00000342220 DPH5Q9H2P9 285 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 AMACRQ9UHK6 382 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 COG5Q9UP83 839 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 MYO7AQ13402 2215 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 M0QYV0 167 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 KRIT1O00522 736 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 GNAT1P11488 350 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 CHRNB2P17787 502 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 IGFBP6P24592 240 aaPredicted RBP13.82□□□□□ -0.2
COL18A1-201ENST00000342220 PSMC1P62191 440 aaKnown RBP13.82□□□□□ -0.2
COL18A1-201ENST00000342220 WDR49Q8IV35 697 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 MORC4Q8TE76 937 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 ZNF606Q8WXB4 792 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 KRT35Q92764 455 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 SPDL1Q96EA4 605 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 ALG6Q9Y672 507 aa13.82□□□□□ -0.2
COL18A1-201ENST00000342220 ZNFX1Q9P2E3 1918 aaKnown RBP13.81□□□□□ -0.2
COL18A1-201ENST00000342220 EZRP15311 586 aaKnown RBP13.81□□□□□ -0.2
COL18A1-201ENST00000342220 COMTP21964 271 aa13.81□□□□□ -0.2
COL18A1-201ENST00000342220 MLH1P40692 756 aa13.81□□□□□ -0.2
COL18A1-201ENST00000342220 FNTAP49354 379 aa13.81□□□□□ -0.2
COL18A1-201ENST00000342220 SNRPFP62306 86 aaKnown RBP13.81□□□□□ -0.2
COL18A1-201ENST00000342220 CDR2Q01850 454 aa13.81□□□□□ -0.2
COL18A1-201ENST00000342220 RBBP5Q15291 538 aaKnown RBP13.81□□□□□ -0.2
COL18A1-201ENST00000342220 NFIL3Q16649 462 aa13.81□□□□□ -0.2
COL18A1-201ENST00000342220 RFFLQ8WZ73 363 aa13.81□□□□□ -0.2
COL18A1-201ENST00000342220 GLT1D1Q96MS3 346 aa13.81□□□□□ -0.2
COL18A1-201ENST00000342220 ZMAT2Q96NC0 199 aaKnown RBP13.81□□□□□ -0.2
COL18A1-201ENST00000342220 MTG1Q9BT17 334 aaPredicted RBP13.81□□□□□ -0.2
COL18A1-201ENST00000342220 TMBIM4Q9HC24 238 aa13.81□□□□□ -0.2
COL18A1-201ENST00000342220 PCSK1NQ9UHG2 260 aa13.81□□□□□ -0.2
COL18A1-201ENST00000342220 NENFQ9UMX5 172 aa13.81□□□□□ -0.2
COL18A1-201ENST00000342220 ST3GAL5Q9UNP4 418 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms