RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 BPTFQ12830 3046 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 SPDYE5A6NIY4 337 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 H0YHG0 523 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 HGSO14964 777 aaPredicted RBP10.93□□□□□ -0.66
LIMA1-201ENST00000341247 BANF1O75531 89 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 GRAP2O75791 330 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 SLC25A27O95847 323 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 ZNF132P52740 706 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 PSMC1P62191 440 aaKnown RBP10.93□□□□□ -0.66
LIMA1-201ENST00000341247 TTLL4Q14679 1199 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 C6orf118Q5T5N4 469 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 FBXW10Q5XX13 1052 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 PACS2Q86VP3 889 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 GDAP1Q8TB36 358 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 GRK7Q8WTQ7 553 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 CABS1Q96KC9 395 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 SDCBP2Q9H190 292 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 STAG3L1P0CL83 205 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 ITIH2P19823 946 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 ADCYAP1R1P41586 468 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 MBTD1Q05BQ5 628 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 PTK6Q13882 451 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 TFDP1Q14186 410 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 EMC10Q5UCC4 262 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 CDCA2Q69YH5 1023 aaPredicted RBP10.93□□□□□ -0.66
LIMA1-201ENST00000341247 KATNAL2Q8IYT4 538 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 C1orf127Q8N9H9 656 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 MAIP1Q8WWC4 291 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 ARHGEF2Q92974 986 aaKnown RBP10.93□□□□□ -0.66
LIMA1-201ENST00000341247 RUNDC3BQ96NL0 473 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 SLITRK1Q96PX8 696 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 ADAM7Q9H2U9 754 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 WHRNQ9P202 907 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 SIX4Q9UIU6 781 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 GGT7Q9UJ14 662 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 SGK1O00141 431 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 CALB1P05937 261 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 OSBPP22059 807 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 GBP1P32455 592 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 CETN2P41208 172 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 ARSEP51690 589 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 NRLP54845 237 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 GPS1Q13098 491 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 TAF5Q15542 800 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 CCDC62Q6P9F0 684 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 EXD1Q8NHP7 514 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 NLRP7Q8WX94 980 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 METTL5Q9NRN9 209 aaKnown RBP10.93□□□□□ -0.66
LIMA1-201ENST00000341247 NINJ2Q9NZG7 142 aa10.93□□□□□ -0.66
LIMA1-201ENST00000341247 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.92□□□□□ -0.66
LIMA1-201ENST00000341247 MEFVO15553 781 aaPredicted RBP10.92□□□□□ -0.66
LIMA1-201ENST00000341247 POLR2BP30876 1174 aaKnown RBP10.92□□□□□ -0.66
LIMA1-201ENST00000341247 CDO1Q16878 200 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 SPOCD1Q6ZMY3 1216 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 EXOC3L1Q86VI1 746 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 CYP4X1Q8N118 509 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 HSPH1Q92598 858 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 SEC16BQ96JE7 1060 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 CPXM1Q96SM3 734 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 TRAIPQ9BWF2 469 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 C2orf40Q9H1Z8 148 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 CXCL16Q9H2A7 254 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 SAYSD1Q9NPB0 183 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 CNTN6Q9UQ52 1028 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 A0A087WUV0 522 aaPredicted RBP10.92□□□□□ -0.66
LIMA1-201ENST00000341247 CXCL11O14625 94 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 HBP1O60381 514 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 CD48P09326 243 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 CETPP11597 493 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 KRT3P12035 628 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 FASTKD3Q14CZ7 662 aaKnown RBP10.92□□□□□ -0.66
LIMA1-201ENST00000341247 CCNG2Q16589 344 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 SPRED3Q2MJR0 410 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 RAB6CQ53S08 254 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 TSHZ1Q6ZSZ6 1077 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 PLPPR4Q7Z2D5 763 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 UBR7Q8N806 425 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 PGM2Q96G03 612 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 VCPIP1Q96JH7 1222 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 HEXIM2Q96MH2 286 aaKnown RBP10.92□□□□□ -0.66
LIMA1-201ENST00000341247 RBM15Q96T37 977 aaKnown RBP eCLIP10.92□□□□□ -0.66
LIMA1-201ENST00000341247 JPH2Q9BR39 696 aaPredicted RBP10.92□□□□□ -0.66
LIMA1-201ENST00000341247 RAB6CQ9H0N0 254 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 FZD8Q9H461 694 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 IFT122Q9HBG6 1241 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 AGAP1Q9UPQ3 857 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 CLEC11AQ9Y240 323 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 IGKV6-21A0A0C4DH24 114 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 M0QYV0 167 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 LGR5O75473 907 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 TTC4O95801 387 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 LGALS2P05162 132 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 IL1R2P27930 398 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 RHBDF2Q6PJF5 856 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 SRRM1Q8IYB3 904 aaKnown RBP10.92□□□□□ -0.66
LIMA1-201ENST00000341247 LRRC34Q8IZ02 419 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 KIAA0319LQ8IZA0 1049 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 CCDC89Q8N998 374 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 PAIP2Q9BPZ3 127 aaKnown RBP10.92□□□□□ -0.66
LIMA1-201ENST00000341247 FAM49AQ9H0Q0 323 aaPredicted RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms