RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 KCNK16Q96T55 309 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 ROGDIQ9GZN7 287 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 TBC1D22BQ9NU19 505 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 PKD2L2Q9NZM6 624 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 RGS5O15539 181 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 KRT8P05787 483 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 CYP11B2P19099 503 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 COPAP53621 1224 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 HMGCS2P54868 508 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 ACCSLQ4AC99 568 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 TTMPQ5BVD1 217 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 SLC47A2Q86VL8 602 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 TEX9Q8N6V9 391 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 EFHBQ8N7U6 833 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 B4GALNT2Q8NHY0 566 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.07□□□□□ -0.96
RTN3-202ENST00000339997 UVRAGQ9P2Y5 699 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 H0Y626 953 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 TRIM16O95361 564 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 TBXAS1P24557 533 aaPredicted RBP9.06□□□□□ -0.96
RTN3-202ENST00000339997 ABCG1P45844 678 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 JAK3P52333 1124 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 CCDC92Q53HC0 331 aaPredicted RBP9.06□□□□□ -0.96
RTN3-202ENST00000339997 MEI1Q5TIA1 1274 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 RBM43Q6ZSC3 357 aaKnown RBP9.06□□□□□ -0.96
RTN3-202ENST00000339997 FAM160B2Q86V87 743 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 PLD3Q8IV08 490 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 NSUN6Q8TEA1 469 aaKnown RBP9.06□□□□□ -0.96
RTN3-202ENST00000339997 ZKSCAN4Q969J2 545 aaPredicted RBP9.06□□□□□ -0.96
RTN3-202ENST00000339997 PAWRQ96IZ0 340 aaKnown RBP9.06□□□□□ -0.96
RTN3-202ENST00000339997 NUDT12Q9BQG2 462 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 ZSWIM1Q9BR11 485 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 COA1Q9GZY4 146 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 JMJD4Q9H9V9 463 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 MAD2L2Q9UI95 211 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 CDK12Q9NYV4 1490 aaPredicted RBP9.06□□□□□ -0.96
RTN3-202ENST00000339997 NCF1BA6NI72 391 aaPredicted RBP9.06□□□□□ -0.96
RTN3-202ENST00000339997 NCF1CA8MVU1 366 aaPredicted RBP9.06□□□□□ -0.96
RTN3-202ENST00000339997 AP3B1O00203 1094 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 APOA1P02647 267 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 NCF1P14598 390 aaPredicted RBP9.06□□□□□ -0.96
RTN3-202ENST00000339997 ETS2P15036 469 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 DSG1Q02413 1049 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 GTF2H3Q13889 308 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 SAPCD2Q86UD0 394 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 LRRC6Q86X45 466 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 RCOR2Q8IZ40 523 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 ARHGEF26Q96DR7 871 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 BBS2Q9BXC9 721 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 FAM129AQ9BZQ8 928 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 BRD8Q9H0E9 1235 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 CHST12Q9NRB3 414 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 GEMIN8Q9NWZ8 242 aaKnown RBP9.06□□□□□ -0.96
RTN3-202ENST00000339997 ATP11BQ9Y2G3 1177 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 MTO1Q9Y2Z2 717 aaKnown RBP9.06□□□□□ -0.96
RTN3-202ENST00000339997 TYW5A2RUC4 315 aaKnown RBP9.06□□□□□ -0.96
RTN3-202ENST00000339997 RCCD1A6NED2 376 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 F8VZ95 297 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 PMPCBO75439 489 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 WBP4O75554 376 aaKnown RBP9.06□□□□□ -0.96
RTN3-202ENST00000339997 GGPS1O95749 300 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 BMP6P22004 513 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 PTPN7P35236 360 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 ETFBP38117 255 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 KRT76Q01546 638 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 MTMR2Q13614 643 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 EPHA7Q15375 998 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 DCAF6Q58WW2 860 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 GLRA4Q5JXX5 417 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 DEPDC1Q5TB30 811 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 PLEKHA7Q6IQ23 1121 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 KCTD17Q8N5Z5 321 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 CYP2W1Q8TAV3 490 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 DCAF4Q8WV16 495 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 AGBL1Q96MI9 1066 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 CCDC134Q9H6E4 229 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 SEL1LQ9UBV2 794 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 ENTPD5O75356 428 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 WDR47O94967 919 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 SHBGP04278 402 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 OCM2P0CE71 109 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 OCMP0CE72 109 aaPredicted RBP9.06□□□□□ -0.96
RTN3-202ENST00000339997 GEMIN4P57678 1058 aaKnown RBP9.06□□□□□ -0.96
RTN3-202ENST00000339997 RASA2Q15283 850 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 DAB2IPQ5VWQ8 1189 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 ZSCAN18Q8TBC5 510 aaPredicted RBP9.06□□□□□ -0.96
RTN3-202ENST00000339997 AGAP11Q8TF27 550 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 LRRN4Q8WUT4 740 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 CMTM5Q96DZ9 223 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 KLHL25Q9H0H3 589 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 KCTD10Q9H3F6 313 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 LATS2Q9NRM7 1088 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 SAE1Q9UBE0 346 aaPredicted RBP9.06□□□□□ -0.96
RTN3-202ENST00000339997 PNMA3Q9UL41 463 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 STAP1Q9ULZ2 295 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 TMA7Q9Y2S6 64 aaKnown RBP9.06□□□□□ -0.96
RTN3-202ENST00000339997 RPS6KL1Q9Y6S9 549 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 FLT1P17948 1338 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 PNPLA7Q6ZV29 1317 aa9.06□□□□□ -0.96
RTN3-202ENST00000339997 TMEM150BA6NC51 233 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms