RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 CREG2Q8IUH2 290 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 USP38Q8NB14 1042 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 MNS1Q8NEH6 495 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 TET1Q8NFU7 2136 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 OR6B3Q8NGW1 331 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 SCLYQ96I15 445 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 MS4A14Q96JA4 679 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 ZNF333Q96JL9 665 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 HEXIM2Q96MH2 286 aaKnown RBP4.4□□□□□ -1.7
MCF2-201ENST00000338585 TRAIPQ9BWF2 469 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 PPP1R12CQ9BZL4 782 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 TSPYL2Q9H2G4 693 aaPredicted RBP4.4□□□□□ -1.7
MCF2-201ENST00000338585 RSAD1Q9HA92 442 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 FAM49BQ9NUQ9 324 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 ADAM22Q9P0K1 906 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 L1RE1Q9UN81 338 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 STXBP5LQ9Y2K9 1186 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 GIT1Q9Y2X7 761 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 I3L4J1 428 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 O00370 1275 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 XPOTO43592 962 aaKnown RBP4.4□□□□□ -1.71
MCF2-201ENST00000338585 MICAL2O94851 1124 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 KIF4AO95239 1232 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 THP07101 528 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 MMP8P22894 467 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 MARCKSL1P49006 195 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 RAB27AP51159 221 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 LBX1P52954 281 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 CCL23P55773 120 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 RNASE9P60153 205 aaKnown RBP4.4□□□□□ -1.71
MCF2-201ENST00000338585 ELF2Q15723 593 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 IFI16Q16666 785 aaKnown RBP4.4□□□□□ -1.71
MCF2-201ENST00000338585 TRIM60Q495X7 471 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 PTPN20Q4JDL3 420 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 CYP4A22Q5TCH4 519 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 DAB2IPQ5VWQ8 1189 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 SLC39A5Q6ZMH5 540 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 TRIM72Q6ZMU5 477 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 PEX26Q7Z412 305 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 CTU1Q7Z7A3 348 aaKnown RBP4.4□□□□□ -1.71
MCF2-201ENST00000338585 OSTM1Q86WC4 334 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 PHF13Q86YI8 300 aaPredicted RBP4.4□□□□□ -1.71
MCF2-201ENST00000338585 RHOT2Q8IXI1 618 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 HACE1Q8IYU2 909 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 DBF4BQ8NFT6 615 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 UBA3Q8TBC4 463 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 ZNF564Q8TBZ8 553 aaPredicted RBP4.4□□□□□ -1.71
MCF2-201ENST00000338585 CAGE1Q8TC20 777 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 HASPINQ8TF76 798 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 FAXDC2Q96IV6 333 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 ZNF560Q96MR9 790 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 NT5C1AQ9BXI3 368 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 CRISPLD2Q9H0B8 497 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 ABCB6Q9NP58 842 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 RGS18Q9NS28 235 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 PCDHGC3Q9UN70 934 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.4□□□□□ -1.71
MCF2-201ENST00000338585 TIMM13Q9Y5L4 95 aaPredicted RBP4.4□□□□□ -1.71
MCF2-201ENST00000338585 ALG6Q9Y672 507 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 SQORQ9Y6N5 450 aa4.4□□□□□ -1.71
MCF2-201ENST00000338585 SCN5AQ14524 2016 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 KIAA0100Q14667 2235 aaKnown RBP4.39□□□□□ -1.71
MCF2-201ENST00000338585 A8MXQ7 604 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 M0QYV0 167 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 TULP2O00295 520 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 PIK3R2O00459 728 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 PODXLO00592 558 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 KCNK3O14649 394 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 ATP2C2O75185 946 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 MTA2O94776 668 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 LSM8O95777 96 aaKnown RBP4.39□□□□□ -1.71
MCF2-201ENST00000338585 ITGB1P05556 798 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 VDRP11473 427 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 COMTP21964 271 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 ACAT1P24752 427 aaKnown RBP4.39□□□□□ -1.71
MCF2-201ENST00000338585 PNPLA4P41247 253 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 GATMP50440 423 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 HADHBP55084 474 aaKnown RBP4.39□□□□□ -1.71
MCF2-201ENST00000338585 TLE2Q04725 743 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 FAAP100Q0VG06 881 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 MAMLD1Q13495 774 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 BFSP2Q13515 415 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 TCEAL1Q15170 157 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 RPS6KA1Q15418 735 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 WHAMMP3Q1A5X7 153 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 GOLGA7BQ2TAP0 167 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 SV2CQ496J9 727 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 SGO2Q562F6 1265 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 CLLU1OSQ5K130 101 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 TEX35Q5T0J7 233 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 PPP1R26Q5T8A7 1209 aaPredicted RBP4.39□□□□□ -1.71
MCF2-201ENST00000338585 WSCD1Q658N2 575 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 SLC24A5Q71RS6 500 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 LIMS2Q7Z4I7 341 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 ADGRF2Q8IZF7 708 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 PDCL2Q8N4E4 241 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 NOA1Q8NC60 698 aaKnown RBP4.39□□□□□ -1.71
MCF2-201ENST00000338585 TMEM35BQ8NCS4 154 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 ALG3Q92685 438 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 KRT35Q92764 455 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms