RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 SLC44A4Q53GD3 710 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 SP8Q8IXZ3 490 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 NT5C1AQ9BXI3 368 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 KCTD10Q9H3F6 313 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 MRPL42Q9Y6G3 142 aaKnown RBP13.15□□□□□ -0.3
SDC3-201ENST00000336798 F8W810 466 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 CHI3L1P36222 383 aaPredicted RBP13.15□□□□□ -0.3
SDC3-201ENST00000336798 CCDC15Q0P6D6 951 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 SEPT1Q8WYJ6 367 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 FBXO2Q9UK22 296 aaPredicted RBP13.15□□□□□ -0.3
SDC3-201ENST00000336798 PSMD3O43242 534 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 HLA-DRAP01903 254 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 KCNJ1P48048 391 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 RGS4P49798 205 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 TP53BP2Q13625 1128 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 CHI3L2Q15782 390 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 PGS1Q32NB8 556 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 DENND5BQ6ZUT9 1274 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 CENPTQ96BT3 561 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 CNBD2Q96M20 576 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 PARK7Q99497 189 aaKnown RBP13.15□□□□□ -0.3
SDC3-201ENST00000336798 HERC5Q9UII4 1024 aaKnown RBP13.15□□□□□ -0.3
SDC3-201ENST00000336798 PLEKHG1Q9ULL1 1385 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 PFASO15067 1338 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 RNF103O00237 685 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 SKAP2O75563 359 aaPredicted RBP13.15□□□□□ -0.3
SDC3-201ENST00000336798 PARNO95453 639 aaKnown RBP13.15□□□□□ -0.3
SDC3-201ENST00000336798 FAM107AO95990 144 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 NDUFB10O96000 172 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 VSNL1P62760 191 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 KCNB1Q14721 858 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 ARHGAP15Q53QZ3 475 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 SPIRE2Q8WWL2 714 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 TMEM39BQ9GZU3 492 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 NFIBO00712 420 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 GPD1P21695 349 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 MAPRE1Q15691 268 aaKnown RBP13.15□□□□□ -0.3
SDC3-201ENST00000336798 NBPF9Q3BBW0 867 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 TDRD10Q5VZ19 366 aaKnown RBP13.15□□□□□ -0.3
SDC3-201ENST00000336798 MIB1Q86YT6 1006 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 TEX13BQ9BXU2 312 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 PSMC3IPQ9P2W1 217 aaPredicted RBP13.15□□□□□ -0.3
SDC3-201ENST00000336798 DGAT1O75907 488 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 DMPKQ09013 629 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 BYSLQ13895 437 aaKnown RBP13.14□□□□□ -0.31
SDC3-201ENST00000336798 TRIP4Q15650 581 aaPredicted RBP13.14□□□□□ -0.31
SDC3-201ENST00000336798 C2CD6Q53TS8 623 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 DCP1BQ8IZD4 617 aaKnown RBP13.14□□□□□ -0.31
SDC3-201ENST00000336798 KRT78Q8N1N4 520 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 TBC1D16Q8TBP0 767 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 ZNF669Q96BR6 464 aaPredicted RBP13.14□□□□□ -0.31
SDC3-201ENST00000336798 OSBPL5Q9H0X9 879 aaPredicted RBP13.14□□□□□ -0.31
SDC3-201ENST00000336798 TFR2Q9UP52 801 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 DAGLAQ9Y4D2 1042 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 ADAMTS12P58397 1594 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 FLT1P17948 1338 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 PDXKO00764 312 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 MAPK9P45984 424 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 ALDH7A1P49419 539 aaKnown RBP13.14□□□□□ -0.31
SDC3-201ENST00000336798 HUNKP57058 714 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 STXBP3O00186 592 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 PSMD14O00487 310 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 CD4P01730 458 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 CDH2P19022 906 aaPredicted RBP13.14□□□□□ -0.31
SDC3-201ENST00000336798 ATN1P54259 1190 aaPredicted RBP13.14□□□□□ -0.31
SDC3-201ENST00000336798 TRAF7Q6Q0C0 670 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 C16orf89Q6UX73 402 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 CCDC60Q8IWA6 550 aaPredicted RBP13.14□□□□□ -0.31
SDC3-201ENST00000336798 PIF1Q9H611 641 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 DEAF1O75398 565 aaPredicted RBP13.14□□□□□ -0.31
SDC3-201ENST00000336798 POLBP06746 335 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 CLK1P49759 484 aaKnown RBP13.14□□□□□ -0.31
SDC3-201ENST00000336798 PHKG1Q16816 387 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 CLEC16AQ2KHT3 1053 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 SAMD7Q7Z3H4 446 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 THUMPD3Q9BV44 507 aaKnown RBP13.14□□□□□ -0.31
SDC3-201ENST00000336798 ZNF70Q9UC06 446 aaPredicted RBP13.14□□□□□ -0.31
SDC3-201ENST00000336798 ZNRF3Q9ULT6 936 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 CST8O60676 142 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 ASS1P00966 412 aaKnown RBP13.14□□□□□ -0.31
SDC3-201ENST00000336798 NR3C2P08235 984 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 PCNAP12004 261 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 PRIM2P49643 509 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 PIGHQ14442 188 aaPredicted RBP13.14□□□□□ -0.31
SDC3-201ENST00000336798 OLFML1Q6UWY5 402 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 BBS7Q8IWZ6 715 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 STK33Q9BYT3 514 aa13.14□□□□□ -0.31
SDC3-201ENST00000336798 UNKQ9C0B0 810 aaKnown RBP13.14□□□□□ -0.31
SDC3-201ENST00000336798 COMTP21964 271 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 RUNX1T1Q06455 604 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 FMR1Q06787 632 aaKnown RBP eCLIP13.13□□□□□ -0.31
SDC3-201ENST00000336798 HIST2H2ACQ16777 129 aaPredicted RBP13.13□□□□□ -0.31
SDC3-201ENST00000336798 TTC39BQ5VTQ0 682 aaPredicted RBP13.13□□□□□ -0.31
SDC3-201ENST00000336798 HIST2H2AA3Q6FI13 130 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 HPDLQ96IR7 371 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.13□□□□□ -0.31
SDC3-201ENST00000336798 DNAJB2P25686 324 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 C12orf60Q5U649 245 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 METTL16Q86W50 562 aaKnown RBP13.13□□□□□ -0.31
SDC3-201ENST00000336798 NEDD1Q8NHV4 660 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms