RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 TRIM62Q9BVG3 475 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 PMPCBO75439 489 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 ST8SIA6P61647 398 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 CHSY1Q86X52 802 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 GPRASP2Q96D09 838 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 GLT1D1Q96MS3 346 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 TASP1Q9H6P5 420 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 KIF17Q9P2E2 1029 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 NDUFS3O75489 264 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 ALDH7A1P49419 539 aaKnown RBP10.64□□□□□ -0.71
CHD3-201ENST00000330494 CDC42EP1Q00587 391 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 MIB1Q86YT6 1006 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 ZNF513Q8N8E2 541 aaPredicted RBP10.64□□□□□ -0.71
CHD3-201ENST00000330494 NWD1Q149M9 1564 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 A0A087WZ62 844 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 MAFGO15525 162 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 MEFVO15553 781 aaPredicted RBP10.64□□□□□ -0.71
CHD3-201ENST00000330494 AP1G2O75843 785 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 PPP3CCP48454 512 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 ERVK-24P63145 666 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 ACAD10Q6JQN1 1059 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 NUP93Q8N1F7 819 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 SLC26A7Q8TE54 656 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 FDXACB1Q9BRP7 624 aaPredicted RBP10.64□□□□□ -0.71
CHD3-201ENST00000330494 SPTLC1O15269 473 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 POMCP01189 267 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 ACO1P21399 889 aaKnown RBP10.64□□□□□ -0.71
CHD3-201ENST00000330494 AKAP5P24588 427 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 TAF6P49848 677 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 NR1H3Q13133 447 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 SEC23AQ15436 765 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 PKN1Q16512 942 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 NOA1Q8NC60 698 aaKnown RBP10.64□□□□□ -0.71
CHD3-201ENST00000330494 KAT2BQ92831 832 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 WDCPQ9H6R7 721 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 ETNK1Q9HBU6 452 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 SSU72P8A0A1W2PR75 194 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 RRN3P2A6NIE6 340 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 SUPT3HB4E1H0 165 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 SUPT3HO75486 399 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 STAG3L1P0CL83 205 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 CYP2C8P10632 490 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 SHMT1P34896 483 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 SREBF1P36956 1147 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 PMS1P54277 932 aaKnown RBP10.64□□□□□ -0.71
CHD3-201ENST00000330494 DGKZQ13574 1117 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 ZRANB3Q5FWF4 1079 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 ERO1BQ86YB8 467 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 ENGASEQ8NFI3 743 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 DDIT4Q9NX09 232 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 SFMBT1Q9UHJ3 866 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 PDHXO00330 501 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 CYB561D2O14569 222 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 WEE1P30291 646 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 RGS2P41220 211 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 DYNC1I2Q13409 638 aaKnown RBP10.63□□□□□ -0.71
CHD3-201ENST00000330494 GRIK5Q16478 980 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 DENND5BQ6ZUT9 1274 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 STKLD1Q8NE28 680 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 APOL5Q9BWW9 433 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 TRIM54Q9BYV2 358 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 CCDC90BQ9GZT6 254 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 TMX2Q9Y320 296 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 A0A087X0T9 212 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 PHF20L1A8MW92 1017 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 FAM228BP0C875 321 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 MAP4P27816 1152 aaKnown RBP10.63□□□□□ -0.71
CHD3-201ENST00000330494 MROH9Q5TGP6 573 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 TMA16Q96EY4 203 aaKnown RBP10.63□□□□□ -0.71
CHD3-201ENST00000330494 MTFR1LQ9H019 292 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 WDR35Q9P2L0 1181 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 CASZ1Q86V15 1759 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 HMOX2P30519 316 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 HARS2P49590 506 aaKnown RBP10.63□□□□□ -0.71
CHD3-201ENST00000330494 ZNF200P98182 395 aaPredicted RBP10.63□□□□□ -0.71
CHD3-201ENST00000330494 KYNUQ16719 465 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 C11orf96Q7Z7L8 435 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 JAMLQ86YT9 394 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 MFN1Q8IWA4 741 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 SNTG2Q9NY99 539 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.63□□□□□ -0.71
CHD3-201ENST00000330494 PCSK1P29120 753 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 EPHB2P29323 1055 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 PTK7Q13308 1070 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 DAGLBQ8NCG7 672 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 DNAJB3Q8WWF6 145 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 PURBQ96QR8 312 aaKnown RBP10.63□□□□□ -0.71
CHD3-201ENST00000330494 GBA2Q9HCG7 927 aaPredicted RBP10.63□□□□□ -0.71
CHD3-201ENST00000330494 LATS2Q9NRM7 1088 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 H0Y626 953 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 TPCN2Q8NHX9 752 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 AURKCQ9UQB9 309 aa10.63□□□□□ -0.71
CHD3-201ENST00000330494 WNT10BO00744 389 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 DGKIO75912 1065 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 CXCL8P10145 99 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 ODC1P11926 461 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 SEMA3FQ13275 785 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 GPR63Q9BZJ6 419 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 PKP3Q9Y446 797 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 TMCC1O94876 653 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms