RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 FPGSQ05932 587 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 WSCD1Q658N2 575 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 DCLRE1AQ6PJP8 1040 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 TMCO2Q7Z6W1 182 aaPredicted RBP10.67□□□□□ -0.7
HMGB3-201ENST00000325307 ZNF677Q86XU0 584 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 ZNF606Q8WXB4 792 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 VWCEQ96DN2 955 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 DNAI2Q9GZS0 605 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 ZMYND8Q9ULU4 1186 aaPredicted RBP10.67□□□□□ -0.7
HMGB3-201ENST00000325307 F8W810 466 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 KRT86O43790 486 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 KIF4AO95239 1232 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 ABCB4P21439 1286 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 DEFB103AP81534 67 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 INCA1Q0VD86 236 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 ELF2Q15723 593 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 SPOUT1Q5T280 376 aaKnown RBP10.66□□□□□ -0.7
HMGB3-201ENST00000325307 ACOT1Q86TX2 421 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 TOP6BLQ8N6T0 577 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 SLC4A11Q8NBS3 891 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 PCDHB18PQ96TA0 734 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 TAS2R14Q9NYV8 317 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 TRIM10Q9UDY6 481 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 PDCD11Q14690 1871 aaKnown RBP10.66□□□□□ -0.7
HMGB3-201ENST00000325307 TTC3P53804 2025 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 MACROD2A1Z1Q3 448 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 MED7O43513 233 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 B4GALT3O60512 393 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 EFCAB14O75071 495 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 LCA5LO95447 670 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 PAEPP09466 180 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 ODC1P11926 461 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 TIGD5Q53EQ6 642 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 COLGALT2Q8IYK4 626 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 SLC30A5Q8TAD4 765 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 WHAMMQ8TF30 809 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 DDX1Q92499 740 aaKnown RBP10.66□□□□□ -0.7
HMGB3-201ENST00000325307 SYT11Q9BT88 431 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 PACSIN1Q9BY11 444 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 HCSTQ9UBK5 93 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 CEP83Q9Y592 693 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 CCDC66A2RUB6 948 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 RCCD1A6NED2 376 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 TADA2AO75478 443 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 FGBP02675 491 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 ITGB1P05556 798 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 H2AFZP0C0S5 128 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 GNG11P61952 73 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 WDR5P61964 334 aaKnown RBP10.66□□□□□ -0.7
HMGB3-201ENST00000325307 DSC1Q08554 894 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 SGO2Q562F6 1265 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 C10orf76Q5T2E6 689 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 NAA35Q5VZE5 725 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 H2AFVQ71UI9 128 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 METTL23Q86XA0 190 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 LRRC43Q8N309 656 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 TFAP2BQ92481 460 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 ABHD8Q96I13 439 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 TSGA10Q9BZW7 698 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 LACRTQ9GZZ8 138 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 NRDE2Q9H7Z3 1164 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 FAM49BQ9NUQ9 324 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 MRFAP1Q9Y605 127 aa10.66□□□□□ -0.7
HMGB3-201ENST00000325307 TDRD15B5MCY1 1934 aaKnown RBP10.65□□□□□ -0.7
HMGB3-201ENST00000325307 HCRTO43612 131 aa10.65□□□□□ -0.7
HMGB3-201ENST00000325307 TACC1O75410 805 aa10.65□□□□□ -0.7
HMGB3-201ENST00000325307 FTLP02792 175 aaPredicted RBP10.65□□□□□ -0.7
HMGB3-201ENST00000325307 ALDH2P05091 517 aa10.65□□□□□ -0.7
HMGB3-201ENST00000325307 COL13A1Q5TAT6 717 aaPredicted RBP10.65□□□□□ -0.7
HMGB3-201ENST00000325307 ZNF365Q70YC5 407 aa10.65□□□□□ -0.7
HMGB3-201ENST00000325307 KBTBD7Q8WVZ9 684 aa10.65□□□□□ -0.7
HMGB3-201ENST00000325307 CPA5Q8WXQ8 436 aa10.65□□□□□ -0.7
HMGB3-201ENST00000325307 ZBTB9Q96C00 473 aa10.65□□□□□ -0.7
HMGB3-201ENST00000325307 CYFIP2Q96F07 1278 aa10.65□□□□□ -0.7
HMGB3-201ENST00000325307 FAM124BQ9H5Z6 455 aaPredicted RBP10.65□□□□□ -0.7
HMGB3-201ENST00000325307 CFHP08603 1231 aa10.65□□□□□ -0.7
HMGB3-201ENST00000325307 LMO2P25791 158 aa10.65□□□□□ -0.7
HMGB3-201ENST00000325307 PBX3P40426 434 aa10.65□□□□□ -0.7
HMGB3-201ENST00000325307 NSFP46459 744 aaKnown RBP10.65□□□□□ -0.7
HMGB3-201ENST00000325307 CDR1P51861 262 aa10.65□□□□□ -0.7
HMGB3-201ENST00000325307 BCAR1P56945 870 aa10.65□□□□□ -0.7
HMGB3-201ENST00000325307 UNC93AQ86WB7 457 aa10.65□□□□□ -0.7
HMGB3-201ENST00000325307 CTNNBL1Q8WYA6 563 aaPredicted RBP10.65□□□□□ -0.7
HMGB3-201ENST00000325307 TOP1MTQ969P6 601 aa10.65□□□□□ -0.7
HMGB3-201ENST00000325307 LBHD1Q9BQE6 289 aaPredicted RBP10.65□□□□□ -0.7
HMGB3-201ENST00000325307 DPEP3Q9H4B8 488 aa10.65□□□□□ -0.7
HMGB3-201ENST00000325307 FAN1Q9Y2M0 1017 aa10.65□□□□□ -0.7
HMGB3-201ENST00000325307 DUSP10Q9Y6W6 482 aa10.65□□□□□ -0.7
HMGB3-201ENST00000325307 NT5C1B-RDH14C9J2C7 533 aa10.65□□□□□ -0.71
HMGB3-201ENST00000325307 KIF5CO60282 957 aa10.65□□□□□ -0.71
HMGB3-201ENST00000325307 BAIAP3O94812 1187 aa10.65□□□□□ -0.71
HMGB3-201ENST00000325307 ACAT1P24752 427 aaKnown RBP10.65□□□□□ -0.71
HMGB3-201ENST00000325307 GALCP54803 685 aa10.65□□□□□ -0.71
HMGB3-201ENST00000325307 PSMC1P62191 440 aaKnown RBP10.65□□□□□ -0.71
HMGB3-201ENST00000325307 CLEC16AQ2KHT3 1053 aa10.65□□□□□ -0.71
HMGB3-201ENST00000325307 CRIPAKQ8N1N5 446 aa10.65□□□□□ -0.71
HMGB3-201ENST00000325307 TMEM86AQ8N2M4 240 aa10.65□□□□□ -0.71
HMGB3-201ENST00000325307 C12orf29Q8N999 325 aa10.65□□□□□ -0.71
HMGB3-201ENST00000325307 TNIP3Q96KP6 325 aa10.65□□□□□ -0.71
HMGB3-201ENST00000325307 COLEC11Q9BWP8 271 aa10.65□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms