RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 TEAD2Q15562 447 aa17.52■□□□□ 0.4
LSM1-201ENST00000311351 SOWAHAQ2M3V2 549 aa17.52■□□□□ 0.4
LSM1-201ENST00000311351 MGAT5BQ3V5L5 792 aa17.52■□□□□ 0.4
LSM1-201ENST00000311351 FAM78AQ5JUQ0 283 aa17.52■□□□□ 0.4
LSM1-201ENST00000311351 GOLGA5Q8TBA6 731 aa17.52■□□□□ 0.4
LSM1-201ENST00000311351 HPDLQ96IR7 371 aa17.52■□□□□ 0.4
LSM1-201ENST00000311351 FNBP1Q96RU3 617 aa17.52■□□□□ 0.4
LSM1-201ENST00000311351 PLA2G2FQ9BZM2 168 aa17.52■□□□□ 0.4
LSM1-201ENST00000311351 KCNH6Q9H252 994 aa17.52■□□□□ 0.4
LSM1-201ENST00000311351 SLC2A4RGQ9NR83 387 aa17.52■□□□□ 0.4
LSM1-201ENST00000311351 DDX43Q9NXZ2 648 aaKnown RBP17.52■□□□□ 0.4
LSM1-201ENST00000311351 CGNQ9P2M7 1197 aaKnown RBP17.52■□□□□ 0.4
LSM1-201ENST00000311351 WNT16Q9UBV4 365 aa17.52■□□□□ 0.4
LSM1-201ENST00000311351 R3HCC1Q9Y3T6 440 aaKnown RBP17.52■□□□□ 0.4
LSM1-201ENST00000311351 OBSL1O75147 1896 aa17.52■□□□□ 0.39
LSM1-201ENST00000311351 A0A1W2PRU2 124 aa17.51■□□□□ 0.39
LSM1-201ENST00000311351 TSPY1Q01534 308 aa17.51■□□□□ 0.39
LSM1-201ENST00000311351 MYO1EQ12965 1108 aa17.51■□□□□ 0.39
LSM1-201ENST00000311351 INTS6LQ5JSJ4 861 aaKnown RBP17.51■□□□□ 0.39
LSM1-201ENST00000311351 STXBP5Q5T5C0 1151 aa17.51■□□□□ 0.39
LSM1-201ENST00000311351 ASTLQ6HA08 431 aaPredicted RBP17.51■□□□□ 0.39
LSM1-201ENST00000311351 TANGO2Q6ICL3 276 aa17.51■□□□□ 0.39
LSM1-201ENST00000311351 DCP1BQ8IZD4 617 aaKnown RBP17.51■□□□□ 0.39
LSM1-201ENST00000311351 TMEM86AQ8N2M4 240 aa17.51■□□□□ 0.39
LSM1-201ENST00000311351 TOP6BLQ8N6T0 577 aa17.51■□□□□ 0.39
LSM1-201ENST00000311351 LEMD2Q8NC56 503 aa17.51■□□□□ 0.39
LSM1-201ENST00000311351 STKLD1Q8NE28 680 aa17.51■□□□□ 0.39
LSM1-201ENST00000311351 FAM200AQ8TCP9 573 aa17.51■□□□□ 0.39
LSM1-201ENST00000311351 SPPL2BQ8TCT7 592 aa17.51■□□□□ 0.39
LSM1-201ENST00000311351 NUP210Q8TEM1 1887 aaPredicted RBP17.51■□□□□ 0.39
LSM1-201ENST00000311351 KBTBD7Q8WVZ9 684 aa17.51■□□□□ 0.39
LSM1-201ENST00000311351 ZNF516Q92618 1163 aa17.51■□□□□ 0.39
LSM1-201ENST00000311351 PSMG2Q969U7 264 aa17.51■□□□□ 0.39
LSM1-201ENST00000311351 ZSWIM3Q96MP5 696 aa17.51■□□□□ 0.39
LSM1-201ENST00000311351 ARHGEF3Q9NR81 526 aa17.51■□□□□ 0.39
LSM1-201ENST00000311351 PTPRDP23468 1912 aa17.51■□□□□ 0.39
LSM1-201ENST00000311351 NCANO14594 1321 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 COL4A2P08572 1712 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 PI15O43692 258 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 MICAL2O94851 1124 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 RHOBTB3O94955 611 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 CST3P01034 146 aaPredicted RBP17.5■□□□□ 0.39
LSM1-201ENST00000311351 NR3C1P04150 777 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 HAPLN1P10915 354 aaPredicted RBP17.5■□□□□ 0.39
LSM1-201ENST00000311351 GPR15P49685 360 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 MYL7Q01449 175 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 NHLH1Q02575 133 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 TCF15Q12870 199 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 DNAJB7Q7Z6W7 309 aaPredicted RBP17.5■□□□□ 0.39
LSM1-201ENST00000311351 GIPC2Q8TF65 315 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 C2orf15Q8WU43 125 aaKnown RBP17.5■□□□□ 0.39
LSM1-201ENST00000311351 ASB16Q96NS5 453 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 PKMYT1Q99640 499 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 PI4K2AQ9BTU6 479 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 SLITRK6Q9H5Y7 841 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 TBC1D17Q9HA65 648 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 DMAC2Q9NW81 257 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 HSFX1Q9UBD0 423 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 MAPK8IP1Q9UQF2 711 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 PCDHB5Q9Y5E4 795 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 MIA3Q5JRA6 1907 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 DENND4CQ5VZ89 1909 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 TICRRQ7Z2Z1 1910 aa17.5■□□□□ 0.39
LSM1-201ENST00000311351 PIEZO1Q92508 2521 aa17.49■□□□□ 0.39
LSM1-201ENST00000311351 LRRIQ3A6PVS8 624 aaPredicted RBP17.49■□□□□ 0.39
LSM1-201ENST00000311351 PDXKO00764 312 aa17.49■□□□□ 0.39
LSM1-201ENST00000311351 GABRDO14764 452 aa17.49■□□□□ 0.39
LSM1-201ENST00000311351 PRPF40AO75400 957 aaKnown RBP17.49■□□□□ 0.39
LSM1-201ENST00000311351 ECI2O75521 394 aa17.49■□□□□ 0.39
LSM1-201ENST00000311351 AOC1P19801 751 aa17.49■□□□□ 0.39
LSM1-201ENST00000311351 TUFMP49411 452 aaKnown RBP17.49■□□□□ 0.39
LSM1-201ENST00000311351 SMARCB1Q12824 385 aa17.49■□□□□ 0.39
LSM1-201ENST00000311351 GRM2Q14416 872 aa17.49■□□□□ 0.39
LSM1-201ENST00000311351 GAREM2Q75VX8 874 aa17.49■□□□□ 0.39
LSM1-201ENST00000311351 LIMS2Q7Z4I7 341 aa17.49■□□□□ 0.39
LSM1-201ENST00000311351 ZSCAN18Q8TBC5 510 aaPredicted RBP17.49■□□□□ 0.39
LSM1-201ENST00000311351 CCDC47Q96A33 483 aaKnown RBP17.49■□□□□ 0.39
LSM1-201ENST00000311351 ACBD6Q9BR61 282 aa17.49■□□□□ 0.39
LSM1-201ENST00000311351 ASB3Q9Y575 518 aa17.49■□□□□ 0.39
LSM1-201ENST00000311351 ATP2C2O75185 946 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 RFX1P22670 979 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 GABRR2P28476 465 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 VIPR2P41587 438 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 CLCN5P51795 746 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 PSMC1P62191 440 aaKnown RBP17.48■□□□□ 0.39
LSM1-201ENST00000311351 DLG4P78352 724 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 CYP4F8P98187 520 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 PNOCQ13519 176 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 VEPH1Q14D04 833 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 SDHAF4Q5VUM1 108 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 TDRD10Q5VZ19 366 aaKnown RBP17.48■□□□□ 0.39
LSM1-201ENST00000311351 ITIH5Q86UX2 942 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 SLC9A9Q8IVB4 645 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 FMR1NBQ8N0W7 255 aaPredicted RBP17.48■□□□□ 0.39
LSM1-201ENST00000311351 SPATA18Q8TC71 538 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 PARD3BQ8TEW8 1205 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 SMARCD2Q92925 531 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 ELSPBP1Q96BH3 223 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 ELMO3Q96BJ8 720 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 MMS19Q96T76 1030 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms